Zm00001e025163_P001

Description : transcription factor (ARF)

Gene families : OG0000080 (Archaeplastida) Phylogenetic Tree(s): OG0000080_tree ,
OG_05_0000516 (LandPlants) Phylogenetic Tree(s): OG_05_0000516_tree ,
OG_06_0000730 (SeedPlants) Phylogenetic Tree(s): OG_06_0000730_tree

Sequence : coding (download), protein (download)

Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Zm00001e025163_P001
Cluster	HCCA: Cluster_276

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00148p00046020	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.B3...	0.03	Archaeplastida
GSVIVT01019566001	No alias	RNA biosynthesis.transcriptional activation.B3...	0.06	Archaeplastida
GSVIVT01020805001	No alias	RNA biosynthesis.transcriptional activation.B3...	0.03	Archaeplastida
LOC_Os02g35140.1	No alias	transcription factor (ARF)	0.03	Archaeplastida
LOC_Os05g48870.1	No alias	transcription factor (ARF)	0.06	Archaeplastida
LOC_Os11g32110.1	No alias	transcription factor (ARF)	0.03	Archaeplastida
MA_10022392g0010	No alias	transcription factor (ARF)	0.02	Archaeplastida
MA_55076g0010	No alias	transcription factor (ARF)	0.03	Archaeplastida
MA_85955g0010	No alias	transcription factor (ARF)	0.04	Archaeplastida
Mp2g02890.1	No alias	Auxin response factor 19 OS=Oryza sativa subsp. japonica...	0.02	Archaeplastida
Pp3c14_16990V3.1	No alias	auxin response factor 6	0.03	Archaeplastida
Pp3c1_40270V3.1	No alias	auxin response factor 6	0.04	Archaeplastida
Smo424114	No alias	RNA biosynthesis.transcriptional activation.B3...	0.05	Archaeplastida
Solyc03g031970.4.1	No alias	transcription factor (ARF)	0.04	Archaeplastida
Zm00001e013639_P001	No alias	transcription factor (ARF)	0.04	Archaeplastida
Zm00001e016366_P002	No alias	transcription factor (ARF)	0.03	Archaeplastida
Zm00001e018165_P001	No alias	no hits & (original description: none)	0.03	Archaeplastida
Zm00001e018761_P001	No alias	transcription factor (ARF)	0.04	Archaeplastida
Zm00001e020205_P004	No alias	transcription factor (ARF)	0.04	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	Interproscan
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009719	response to endogenous stimulus	None	Extended
BP	GO:0009725	response to hormone	IEA	Interproscan
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010033	response to organic substance	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0042221	response to chemical	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
MF	GO:0003682	chromatin binding	IEP	Neighborhood
CC	GO:0005737	cytoplasm	IEP	Neighborhood
BP	GO:0006914	autophagy	IEP	Neighborhood
BP	GO:0061919	process utilizing autophagic mechanism	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR033389	AUX/IAA_dom	774	866
IPR003340	B3_DNA-bd	134	235
IPR010525	Auxin_resp	260	343

External Links

No external refs found!

Zm00001e025163_P001

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation