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AT3G29270


Description : RING/U-box superfamily protein


Gene families : OG0003403 (Archaeplastida) Phylogenetic Tree(s): OG0003403_tree ,
OG_05_0004234 (LandPlants) Phylogenetic Tree(s): OG_05_0004234_tree ,
OG_06_0005961 (SeedPlants) Phylogenetic Tree(s): OG_06_0005961_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT3G29270
Cluster HCCA: Cluster_76

Target Alias Description ECC score Gene Family Method Actions
Zm00001e002030_P001 No alias RING-HC-class E3 ligase 0.01 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0004842 ubiquitin-protein transferase activity IDA Interproscan
CC GO:0005737 cytoplasm ISM Interproscan
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Type GO Term Name Evidence Source
BP GO:0000255 allantoin metabolic process IEP Neighborhood
MF GO:0000268 peroxisome targeting sequence binding IEP Neighborhood
MF GO:0000287 magnesium ion binding IEP Neighborhood
BP GO:0000578 embryonic axis specification IEP Neighborhood
CC GO:0000932 P-body IEP Neighborhood
MF GO:0000976 transcription regulatory region sequence-specific DNA binding IEP Neighborhood
MF GO:0000987 proximal promoter sequence-specific DNA binding IEP Neighborhood
BP GO:0001560 regulation of cell growth by extracellular stimulus IEP Neighborhood
BP GO:0001709 cell fate determination IEP Neighborhood
MF GO:0003997 acyl-CoA oxidase activity IEP Neighborhood
MF GO:0004551 nucleotide diphosphatase activity IEP Neighborhood
MF GO:0004605 phosphatidate cytidylyltransferase activity IEP Neighborhood
MF GO:0004749 ribose phosphate diphosphokinase activity IEP Neighborhood
MF GO:0005048 signal sequence binding IEP Neighborhood
MF GO:0005053 peroxisome matrix targeting signal-2 binding IEP Neighborhood
MF GO:0005539 glycosaminoglycan binding IEP Neighborhood
CC GO:0005634 nucleus IEP Neighborhood
CC GO:0005681 spliceosomal complex IEP Neighborhood
BP GO:0006625 protein targeting to peroxisome IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
MF GO:0008327 methyl-CpG binding IEP Neighborhood
BP GO:0009396 folic acid-containing compound biosynthetic process IEP Neighborhood
BP GO:0009643 photosynthetic acclimation IEP Neighborhood
CC GO:0010369 chromocenter IEP Neighborhood
BP GO:0015919 peroxisomal membrane transport IEP Neighborhood
BP GO:0016558 protein import into peroxisome matrix IEP Neighborhood
MF GO:0016634 oxidoreductase activity, acting on the CH-CH group of donors, oxygen as acceptor IEP Neighborhood
MF GO:0016778 diphosphotransferase activity IEP Neighborhood
MF GO:0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds IEP Neighborhood
MF GO:0016812 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides IEP Neighborhood
MF GO:0016819 hydrolase activity, acting on acid anhydrides, in sulfonyl-containing anhydrides IEP Neighborhood
BP GO:0016998 cell wall macromolecule catabolic process IEP Neighborhood
BP GO:0019428 allantoin biosynthetic process IEP Neighborhood
CC GO:0019897 extrinsic component of plasma membrane IEP Neighborhood
MF GO:0030145 manganese ion binding IEP Neighborhood
BP GO:0031087 deadenylation-independent decapping of nuclear-transcribed mRNA IEP Neighborhood
CC GO:0031234 extrinsic component of cytoplasmic side of plasma membrane IEP Neighborhood
BP GO:0032509 endosome transport via multivesicular body sorting pathway IEP Neighborhood
MF GO:0033971 hydroxyisourate hydrolase activity IEP Neighborhood
MF GO:0035064 methylated histone binding IEP Neighborhood
CC GO:0035770 ribonucleoprotein granule IEP Neighborhood
CC GO:0036464 cytoplasmic ribonucleoprotein granule IEP Neighborhood
BP GO:0042559 pteridine-containing compound biosynthetic process IEP Neighborhood
MF GO:0042834 peptidoglycan binding IEP Neighborhood
CC GO:0043226 organelle IEP Neighborhood
CC GO:0043227 membrane-bounded organelle IEP Neighborhood
CC GO:0043229 intracellular organelle IEP Neighborhood
CC GO:0043231 intracellular membrane-bounded organelle IEP Neighborhood
MF GO:0043530 adenosine 5'-monophosphoramidase activity IEP Neighborhood
MF GO:0043565 sequence-specific DNA binding IEP Neighborhood
BP GO:0043574 peroxisomal transport IEP Neighborhood
BP GO:0044743 protein transmembrane import into intracellular organelle IEP Neighborhood
MF GO:0046914 transition metal ion binding IEP Neighborhood
MF GO:0047627 adenylylsulfatase activity IEP Neighborhood
MF GO:0047710 bis(5'-adenosyl)-triphosphatase activity IEP Neighborhood
MF GO:0050072 m7G(5')pppN diphosphatase activity IEP Neighborhood
BP GO:0051260 protein homooligomerization IEP Neighborhood
BP GO:0051262 protein tetramerization IEP Neighborhood
BP GO:0051289 protein homotetramerization IEP Neighborhood
MF GO:0051997 2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase activity IEP Neighborhood
MF GO:0070567 cytidylyltransferase activity IEP Neighborhood
BP GO:0071985 multivesicular body sorting pathway IEP Neighborhood
BP GO:0072662 protein localization to peroxisome IEP Neighborhood
BP GO:0072663 establishment of protein localization to peroxisome IEP Neighborhood
MF GO:0080025 phosphatidylinositol-3,5-bisphosphate binding IEP Neighborhood
MF GO:0140030 modification-dependent protein binding IEP Neighborhood
MF GO:0140034 methylation-dependent protein binding IEP Neighborhood
BP GO:1900055 regulation of leaf senescence IEP Neighborhood
BP GO:1900056 negative regulation of leaf senescence IEP Neighborhood
MF GO:1901981 phosphatidylinositol phosphate binding IEP Neighborhood
MF GO:1902936 phosphatidylinositol bisphosphate binding IEP Neighborhood
BP GO:1905622 negative regulation of leaf development IEP Neighborhood
MF GO:1990837 sequence-specific double-stranded DNA binding IEP Neighborhood
BP GO:2000024 regulation of leaf development IEP Neighborhood
InterPro domains Description Start Stop
IPR027370 Znf-RING_LisH 54 87
No external refs found!