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  5. Zm00001e025656_P001

Zm00001e025656_P001


Description : transcription factor (bHLH)


Gene families : OG0000092 (Archaeplastida) Phylogenetic Tree(s): OG0000092_tree ,
OG_05_0000040 (LandPlants) Phylogenetic Tree(s): OG_05_0000040_tree ,
OG_06_0000031 (SeedPlants) Phylogenetic Tree(s): OG_06_0000031_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e025656_P001
Cluster HCCA: Cluster_28

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00008p00265010 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.bHLH... 0.02 Archaeplastida
AMTR_s00024p00250370 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.bHLH... 0.03 Archaeplastida
AMTR_s00066p00183410 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.bHLH... 0.03 Archaeplastida
AT1G09530 PIF3, POC1, PAP3 phytochrome interacting factor 3 0.03 Archaeplastida
AT1G27740 RSL4 root hair defective 6-like 4 0.06 Archaeplastida
AT1G66470 RHD6 ROOT HAIR DEFECTIVE6 0.03 Archaeplastida
AT2G43010 SRL2, PIF4, AtPIF4 phytochrome interacting factor 4 0.03 Archaeplastida
AT2G46970 PIL1 phytochrome interacting factor 3-like 1 0.04 Archaeplastida
AT3G50330 HEC2 basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.05 Archaeplastida
AT3G59060 PIL6, PIF5 phytochrome interacting factor 3-like 6 0.03 Archaeplastida
AT4G00120 GT140, IND1, IND, EDA33 basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.02 Archaeplastida
AT5G37800 ATRSL1, RSL1 RHD SIX-LIKE 1 0.05 Archaeplastida
AT5G67060 HEC1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.04 Archaeplastida
GSVIVT01018164001 No alias Transcription factor UNE10 OS=Arabidopsis thaliana 0.03 Archaeplastida
GSVIVT01018165001 No alias RNA biosynthesis.transcriptional activation.bHLH... 0.03 Archaeplastida
GSVIVT01020814001 No alias External stimuli response.light.red/far red light.PIF... 0.02 Archaeplastida
GSVIVT01028238001 No alias RNA biosynthesis.transcriptional activation.bHLH... 0.03 Archaeplastida
GSVIVT01028516001 No alias External stimuli response.light.red/far red light.PIF... 0.02 Archaeplastida
Gb_07156 No alias transcription factor (bHLH). PIF red/far-red light... 0.02 Archaeplastida
Gb_30839 No alias transcription factor (bHLH) 0.02 Archaeplastida
LOC_Os01g02110.1 No alias transcription factor (bHLH) 0.1 Archaeplastida
LOC_Os03g10770.1 No alias transcription factor (bHLH) 0.14 Archaeplastida
LOC_Os03g42100.1 No alias transcription factor (bHLH) 0.08 Archaeplastida
LOC_Os06g10820.1 No alias transcription factor (bHLH) 0.02 Archaeplastida
LOC_Os06g47980.1 No alias no hits & (original description: none) 0.02 Archaeplastida
LOC_Os07g05010.2 No alias transcription factor (bHLH). PIF red/far-red light... 0.04 Archaeplastida
LOC_Os07g39940.1 No alias transcription factor (bHLH) 0.04 Archaeplastida
LOC_Os09g28210.1 No alias transcription factor (bHLH) 0.03 Archaeplastida
LOC_Os11g41640.1 No alias transcription factor (bHLH) 0.04 Archaeplastida
LOC_Os12g39850.1 No alias transcription factor (bHLH) 0.12 Archaeplastida
LOC_Os12g40730.1 No alias transcription factor (bHLH) 0.03 Archaeplastida
MA_100071g0010 No alias no hits & (original description: none) 0.03 Archaeplastida
MA_10156436g0010 No alias transcription factor (bHLH) 0.03 Archaeplastida
MA_29441g0010 No alias transcription factor (bHLH) 0.05 Archaeplastida
MA_83500g0010 No alias transcription factor (bHLH) 0.04 Archaeplastida
MA_88831g0010 No alias transcription factor (bHLH) 0.02 Archaeplastida
Mp5g09710.1 No alias transcription factor (bHLH) 0.02 Archaeplastida
Pp3c16_21590V3.1 No alias ROOT HAIR DEFECTIVE 6-LIKE 2 0.03 Archaeplastida
Pp3c17_21890V3.1 No alias phytochrome interacting factor 3 0.02 Archaeplastida
Pp3c25_13740V3.1 No alias basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.02 Archaeplastida
Pp3c3_28970V3.1 No alias basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.03 Archaeplastida
Smo409967 No alias RNA biosynthesis.transcriptional activation.bHLH... 0.04 Archaeplastida
Smo413232 No alias RNA biosynthesis.transcriptional activation.bHLH... 0.05 Archaeplastida
Solyc01g102300.3.1 No alias transcription factor (bHLH). PIF red/far-red light... 0.02 Archaeplastida
Solyc01g107140.3.1 No alias transcription factor (bHLH) 0.09 Archaeplastida
Solyc02g091440.2.1 No alias transcription factor (bHLH) 0.12 Archaeplastida
Solyc03g044460.1.1 No alias transcription factor (bHLH) 0.02 Archaeplastida
Solyc04g077960.1.1 No alias transcription factor (bHLH) 0.09 Archaeplastida
Solyc06g069600.3.1 No alias transcription factor (bHLH) 0.02 Archaeplastida
Solyc11g005780.3.1 No alias transcription factor (bHLH) 0.03 Archaeplastida
Solyc12g088380.1.1 No alias transcription factor (bHLH) 0.07 Archaeplastida
Zm00001e017430_P001 No alias transcription factor (bHLH) 0.04 Archaeplastida
Zm00001e018003_P001 No alias transcription factor (bHLH) 0.03 Archaeplastida
Zm00001e040380_P002 No alias transcription factor (bHLH). PIF red/far-red light... 0.04 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0046983 protein dimerization activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEP Neighborhood
MF GO:0004427 inorganic diphosphatase activity IEP Neighborhood
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP Neighborhood
MF GO:0004601 peroxidase activity IEP Neighborhood
MF GO:0004672 protein kinase activity IEP Neighborhood
MF GO:0005524 ATP binding IEP Neighborhood
CC GO:0005576 extracellular region IEP Neighborhood
CC GO:0005618 cell wall IEP Neighborhood
BP GO:0005975 carbohydrate metabolic process IEP Neighborhood
BP GO:0005976 polysaccharide metabolic process IEP Neighborhood
BP GO:0006073 cellular glucan metabolic process IEP Neighborhood
BP GO:0006464 cellular protein modification process IEP Neighborhood
BP GO:0006468 protein phosphorylation IEP Neighborhood
BP GO:0006793 phosphorus metabolic process IEP Neighborhood
BP GO:0006796 phosphate-containing compound metabolic process IEP Neighborhood
BP GO:0006950 response to stress IEP Neighborhood
BP GO:0006979 response to oxidative stress IEP Neighborhood
MF GO:0008144 drug binding IEP Neighborhood
BP GO:0008152 metabolic process IEP Neighborhood
MF GO:0009678 hydrogen-translocating pyrophosphatase activity IEP Neighborhood
MF GO:0016209 antioxidant activity IEP Neighborhood
MF GO:0016301 kinase activity IEP Neighborhood
BP GO:0016310 phosphorylation IEP Neighborhood
MF GO:0016684 oxidoreductase activity, acting on peroxide as acceptor IEP Neighborhood
MF GO:0016740 transferase activity IEP Neighborhood
MF GO:0016758 transferase activity, transferring hexosyl groups IEP Neighborhood
MF GO:0016762 xyloglucan:xyloglucosyl transferase activity IEP Neighborhood
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP Neighborhood
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP Neighborhood
MF GO:0016787 hydrolase activity IEP Neighborhood
MF GO:0016788 hydrolase activity, acting on ester bonds IEP Neighborhood
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP Neighborhood
BP GO:0019538 protein metabolic process IEP Neighborhood
CC GO:0030312 external encapsulating structure IEP Neighborhood
MF GO:0030554 adenyl nucleotide binding IEP Neighborhood
MF GO:0032555 purine ribonucleotide binding IEP Neighborhood
MF GO:0032559 adenyl ribonucleotide binding IEP Neighborhood
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Neighborhood
BP GO:0036211 protein modification process IEP Neighborhood
BP GO:0043170 macromolecule metabolic process IEP Neighborhood
BP GO:0043412 macromolecule modification IEP Neighborhood
BP GO:0044042 glucan metabolic process IEP Neighborhood
BP GO:0044237 cellular metabolic process IEP Neighborhood
BP GO:0044238 primary metabolic process IEP Neighborhood
BP GO:0044260 cellular macromolecule metabolic process IEP Neighborhood
BP GO:0044262 cellular carbohydrate metabolic process IEP Neighborhood
BP GO:0044264 cellular polysaccharide metabolic process IEP Neighborhood
BP GO:0044267 cellular protein metabolic process IEP Neighborhood
MF GO:0045735 nutrient reservoir activity IEP Neighborhood
MF GO:0046527 glucosyltransferase activity IEP Neighborhood
CC GO:0048046 apoplast IEP Neighborhood
BP GO:0071704 organic substance metabolic process IEP Neighborhood
MF GO:0140096 catalytic activity, acting on a protein IEP Neighborhood
InterPro domains Description Start Stop
IPR011598 bHLH_dom 244 284
No external refs found!