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  5. Zm00001e026570_P001

Zm00001e026570_P001


Description : WTF1 plastidial RNA basal splicing factor


Gene families : OG0001104 (Archaeplastida) Phylogenetic Tree(s): OG0001104_tree ,
OG_05_0001147 (LandPlants) Phylogenetic Tree(s): OG_05_0001147_tree ,
OG_06_0002903 (SeedPlants) Phylogenetic Tree(s): OG_06_0002903_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e026570_P001
Cluster HCCA: Cluster_133

Target Alias Description ECC score Gene Family Method Actions
AT4G01037 WTF1, AtWTF1 Ubiquitin carboxyl-terminal hydrolase family protein 0.09 Archaeplastida
AT4G08940 No alias Ubiquitin carboxyl-terminal hydrolase family protein 0.03 Archaeplastida
AT5G62990 emb1692 Ubiquitin carboxyl-terminal hydrolase family protein 0.07 Archaeplastida
Gb_07993 No alias WTF1 plastidial RNA basal splicing factor 0.06 Archaeplastida
Gb_34809 No alias WTF1 plastidial RNA basal splicing factor 0.04 Archaeplastida
LOC_Os04g24710.1 No alias Protein WHATS THIS FACTOR 1 homolog OS=Arabidopsis... 0.03 Archaeplastida
LOC_Os05g49610.1 No alias WTF1 plastidial RNA basal splicing factor 0.09 Archaeplastida
MA_158434g0010 No alias WTF1 plastidial RNA basal splicing factor 0.05 Archaeplastida
MA_175611g0010 No alias Protein WHATS THIS FACTOR 1 homolog OS=Oryza sativa... 0.05 Archaeplastida
MA_423098g0010 No alias WTF1 plastidial RNA basal splicing factor 0.09 Archaeplastida
Mp3g04080.1 No alias WTF1 plastidial RNA basal splicing factor 0.03 Archaeplastida
Pp3c18_21300V3.1 No alias Ubiquitin carboxyl-terminal hydrolase family protein 0.03 Archaeplastida
Smo409264 No alias Protein WHATS THIS FACTOR 1 OS=Zea mays 0.02 Archaeplastida
Smo422954 No alias Protein WHATS THIS FACTOR 1 homolog OS=Oryza sativa... 0.03 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000413 protein peptidyl-prolyl isomerization IEP Neighborhood
MF GO:0001882 nucleoside binding IEP Neighborhood
MF GO:0001883 purine nucleoside binding IEP Neighborhood
MF GO:0003690 double-stranded DNA binding IEP Neighborhood
MF GO:0004519 endonuclease activity IEP Neighborhood
MF GO:0005525 GTP binding IEP Neighborhood
CC GO:0005759 mitochondrial matrix IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
MF GO:0008417 fucosyltransferase activity IEP Neighborhood
BP GO:0018208 peptidyl-proline modification IEP Neighborhood
MF GO:0019001 guanyl nucleotide binding IEP Neighborhood
CC GO:0031974 membrane-enclosed lumen IEP Neighborhood
MF GO:0032549 ribonucleoside binding IEP Neighborhood
MF GO:0032550 purine ribonucleoside binding IEP Neighborhood
MF GO:0032561 guanyl ribonucleotide binding IEP Neighborhood
MF GO:0043167 ion binding IEP Neighborhood
MF GO:0043169 cation binding IEP Neighborhood
CC GO:0043233 organelle lumen IEP Neighborhood
CC GO:0044429 mitochondrial part IEP Neighborhood
MF GO:0046872 metal ion binding IEP Neighborhood
MF GO:0046914 transition metal ion binding IEP Neighborhood
CC GO:0070013 intracellular organelle lumen IEP Neighborhood
InterPro domains Description Start Stop
IPR021099 PORR_domain 59 387
No external refs found!