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  5. Zm00001e026608_P001

Zm00001e026608_P001


Description : Putative pentatricopeptide repeat-containing protein At3g47840 OS=Arabidopsis thaliana (sp|q9sts9|pp268_arath : 476.0)


Gene families : OG0000000 (Archaeplastida) Phylogenetic Tree(s): No tree available for this family ,
OG_05_0000000 (LandPlants) Phylogenetic Tree(s): OG_05_0000000_tree ,
OG_06_0000064 (SeedPlants) Phylogenetic Tree(s): OG_06_0000064_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e026608_P001
Cluster HCCA: Cluster_241

Target Alias Description ECC score Gene Family Method Actions
GSVIVT01000086001 No alias Pentatricopeptide repeat-containing protein At3g14330... 0.05 Archaeplastida
GSVIVT01000178001 No alias RNA processing.organelle machineries.RNA... 0.02 Archaeplastida
GSVIVT01003957001 No alias Pentatricopeptide repeat-containing protein At5g65570... 0.03 Archaeplastida
GSVIVT01008173001 No alias Pentatricopeptide repeat-containing protein At1g18485... 0.03 Archaeplastida
GSVIVT01015466001 No alias Pentatricopeptide repeat-containing protein At5g48910... 0.04 Archaeplastida
GSVIVT01017209001 No alias RNA processing.organelle machineries.RNA... 0.03 Archaeplastida
GSVIVT01017365001 No alias Putative pentatricopeptide repeat-containing protein... 0.03 Archaeplastida
GSVIVT01017378001 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.05 Archaeplastida
GSVIVT01018018001 No alias Pentatricopeptide repeat-containing protein At3g22690... 0.05 Archaeplastida
GSVIVT01020091001 No alias RNA processing.organelle machineries.RNA... 0.03 Archaeplastida
GSVIVT01021268001 No alias Pentatricopeptide repeat-containing protein At4g18840... 0.03 Archaeplastida
GSVIVT01025569001 No alias Pentatricopeptide repeat-containing protein At5g66500,... 0.1 Archaeplastida
GSVIVT01027196001 No alias Pentatricopeptide repeat-containing protein At5g08510... 0.05 Archaeplastida
GSVIVT01027525001 No alias Pentatricopeptide repeat-containing protein At4g21065... 0.14 Archaeplastida
GSVIVT01028819001 No alias Pentatricopeptide repeat-containing protein At5g52850,... 0.09 Archaeplastida
GSVIVT01032394001 No alias Pentatricopeptide repeat-containing protein At4g33990... 0.03 Archaeplastida
GSVIVT01032994001 No alias Putative pentatricopeptide repeat-containing protein... 0.05 Archaeplastida
GSVIVT01036142001 No alias Pentatricopeptide repeat-containing protein At5g66520... 0.03 Archaeplastida
GSVIVT01036511001 No alias RNA processing.organelle machineries.RNA... 0.03 Archaeplastida
LOC_Os01g19380.1 No alias Putative pentatricopeptide repeat-containing protein... 0.11 Archaeplastida
LOC_Os11g29360.1 No alias Pentatricopeptide repeat-containing protein At5g66520... 0.03 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 319 341
IPR002885 Pentatricopeptide_repeat 141 171
IPR002885 Pentatricopeptide_repeat 113 140
IPR002885 Pentatricopeptide_repeat 522 545
IPR002885 Pentatricopeptide_repeat 448 495
IPR002885 Pentatricopeptide_repeat 240 290
IPR002885 Pentatricopeptide_repeat 344 394
No external refs found!