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  5. AT3G32940

AT3G32940


Description : RNA-binding KH domain-containing protein


Gene families : OG0001047 (Archaeplastida) Phylogenetic Tree(s): OG0001047_tree ,
OG_05_0001290 (LandPlants) Phylogenetic Tree(s): OG_05_0001290_tree ,
OG_06_0009446 (SeedPlants) Phylogenetic Tree(s): OG_06_0009446_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT3G32940
Cluster HCCA: Cluster_220

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00001154.10 No alias RNA processing.RNA splicing.U2-type-intron-specific... 0.03 Archaeplastida
Cre09.g386731 No alias RNA processing.RNA splicing.U2-type-intron-specific... 0.02 Archaeplastida
GSVIVT01014212001 No alias RNA processing.RNA splicing.U2-type-intron-specific... 0.04 Archaeplastida
Gb_09287 No alias pre-mRNA splicing factor (SF1) 0.03 Archaeplastida
Gb_19921 No alias pre-mRNA splicing factor (SF1) 0.05 Archaeplastida
Gb_23987 No alias pre-mRNA splicing factor (SF1) 0.05 Archaeplastida
LOC_Os04g31620.1 No alias pre-mRNA splicing factor (SF1) 0.05 Archaeplastida
LOC_Os08g01070.2 No alias no hits & (original description: none) 0.03 Archaeplastida
MA_10426554g0020 No alias pre-mRNA splicing factor (SF1) 0.03 Archaeplastida
MA_15045g0010 No alias pre-mRNA splicing factor (SF1) 0.02 Archaeplastida
MA_160895g0010 No alias pre-mRNA splicing factor (SF1) 0.04 Archaeplastida
MA_57875g0010 No alias pre-mRNA splicing factor (SF1) 0.02 Archaeplastida
Solyc01g006010.3.1 No alias no hits & (original description: none) 0.06 Archaeplastida

Type GO Term Name Evidence Source
CC GO:0005634 nucleus ISM Interproscan
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Type GO Term Name Evidence Source
BP GO:0000956 nuclear-transcribed mRNA catabolic process IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003727 single-stranded RNA binding IEP Neighborhood
MF GO:0004000 adenosine deaminase activity IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
CC GO:0005677 chromatin silencing complex IEP Neighborhood
BP GO:0006325 chromatin organization IEP Neighborhood
BP GO:0006342 chromatin silencing IEP Neighborhood
BP GO:0006349 regulation of gene expression by genetic imprinting IEP Neighborhood
BP GO:0006401 RNA catabolic process IEP Neighborhood
BP GO:0006402 mRNA catabolic process IEP Neighborhood
BP GO:0006470 protein dephosphorylation IEP Neighborhood
BP GO:0006479 protein methylation IEP Neighborhood
BP GO:0008213 protein alkylation IEP Neighborhood
BP GO:0009057 macromolecule catabolic process IEP Neighborhood
BP GO:0009292 genetic transfer IEP Neighborhood
BP GO:0009294 DNA mediated transformation IEP Neighborhood
BP GO:0009648 photoperiodism IEP Neighborhood
BP GO:0009890 negative regulation of biosynthetic process IEP Neighborhood
BP GO:0009892 negative regulation of metabolic process IEP Neighborhood
BP GO:0009960 endosperm development IEP Neighborhood
BP GO:0010048 vernalization response IEP Neighborhood
BP GO:0010229 inflorescence development IEP Neighborhood
BP GO:0010468 regulation of gene expression IEP Neighborhood
BP GO:0010558 negative regulation of macromolecule biosynthetic process IEP Neighborhood
BP GO:0010605 negative regulation of macromolecule metabolic process IEP Neighborhood
BP GO:0010629 negative regulation of gene expression IEP Neighborhood
BP GO:0016043 cellular component organization IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
BP GO:0016071 mRNA metabolic process IEP Neighborhood
MF GO:0016301 kinase activity IEP Neighborhood
BP GO:0016458 gene silencing IEP Neighborhood
BP GO:0016571 histone methylation IEP Neighborhood
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP Neighborhood
MF GO:0016814 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines IEP Neighborhood
CC GO:0017053 transcriptional repressor complex IEP Neighborhood
BP GO:0019222 regulation of metabolic process IEP Neighborhood
MF GO:0019239 deaminase activity IEP Neighborhood
BP GO:0019439 aromatic compound catabolic process IEP Neighborhood
BP GO:0031324 negative regulation of cellular metabolic process IEP Neighborhood
BP GO:0031327 negative regulation of cellular biosynthetic process IEP Neighborhood
BP GO:0032270 positive regulation of cellular protein metabolic process IEP Neighborhood
BP GO:0034250 positive regulation of cellular amide metabolic process IEP Neighborhood
BP GO:0034655 nucleobase-containing compound catabolic process IEP Neighborhood
BP GO:0040029 regulation of gene expression, epigenetic IEP Neighborhood
BP GO:0044265 cellular macromolecule catabolic process IEP Neighborhood
BP GO:0044270 cellular nitrogen compound catabolic process IEP Neighborhood
BP GO:0044764 multi-organism cellular process IEP Neighborhood
BP GO:0045727 positive regulation of translation IEP Neighborhood
BP GO:0045787 positive regulation of cell cycle IEP Neighborhood
BP GO:0045814 negative regulation of gene expression, epigenetic IEP Neighborhood
BP GO:0045892 negative regulation of transcription, DNA-templated IEP Neighborhood
BP GO:0045931 positive regulation of mitotic cell cycle IEP Neighborhood
BP GO:0045934 negative regulation of nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0046700 heterocycle catabolic process IEP Neighborhood
BP GO:0048518 positive regulation of biological process IEP Neighborhood
BP GO:0048519 negative regulation of biological process IEP Neighborhood
BP GO:0048522 positive regulation of cellular process IEP Neighborhood
BP GO:0048573 photoperiodism, flowering IEP Neighborhood
BP GO:0050789 regulation of biological process IEP Neighborhood
BP GO:0050794 regulation of cellular process IEP Neighborhood
BP GO:0051172 negative regulation of nitrogen compound metabolic process IEP Neighborhood
BP GO:0051247 positive regulation of protein metabolic process IEP Neighborhood
BP GO:0051253 negative regulation of RNA metabolic process IEP Neighborhood
BP GO:0060255 regulation of macromolecule metabolic process IEP Neighborhood
BP GO:0071514 genetic imprinting IEP Neighborhood
BP GO:0071840 cellular component organization or biogenesis IEP Neighborhood
CC GO:0090568 nuclear transcriptional repressor complex IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
BP GO:1901361 organic cyclic compound catabolic process IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
BP GO:1902679 negative regulation of RNA biosynthetic process IEP Neighborhood
BP GO:1903507 negative regulation of nucleic acid-templated transcription IEP Neighborhood
BP GO:2000113 negative regulation of cellular macromolecule biosynthetic process IEP Neighborhood

No InterPro domains available for this sequence

No external refs found!