Zm00001e027097_P001

Description : transcription factor (mTERF)

Gene families : OG0000097 (Archaeplastida) Phylogenetic Tree(s): OG0000097_tree ,
OG_05_0000048 (LandPlants) Phylogenetic Tree(s): OG_05_0000048_tree ,
OG_06_0000021 (SeedPlants) Phylogenetic Tree(s): OG_06_0000021_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Zm00001e027097_P001
Cluster	HCCA: Cluster_201

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00010p00117910	evm_27.TU.AmTr_v1...	RNA biosynthesis.organelle...	0.02	Archaeplastida
AMTR_s00010p00225250	evm_27.TU.AmTr_v1...	RNA biosynthesis.organelle...	0.03	Archaeplastida
AMTR_s00010p00225430	evm_27.TU.AmTr_v1...	RNA biosynthesis.organelle...	0.03	Archaeplastida
AMTR_s00010p00230750	evm_27.TU.AmTr_v1...	RNA biosynthesis.organelle...	0.02	Archaeplastida
AMTR_s00010p00235420	evm_27.TU.AmTr_v1...	RNA biosynthesis.organelle...	0.02	Archaeplastida
AMTR_s00010p00236050	evm_27.TU.AmTr_v1...	RNA biosynthesis.organelle...	0.03	Archaeplastida
AMTR_s00010p00236280	evm_27.TU.AmTr_v1...	RNA biosynthesis.organelle...	0.03	Archaeplastida
AMTR_s00010p00236880	evm_27.TU.AmTr_v1...	RNA biosynthesis.organelle...	0.03	Archaeplastida
AMTR_s00038p00175390	evm_27.TU.AmTr_v1...	RNA biosynthesis.organelle...	0.03	Archaeplastida
AMTR_s00060p00059830	evm_27.TU.AmTr_v1...	RNA biosynthesis.organelle...	0.02	Archaeplastida
AMTR_s01360p00009540	evm_27.TU.AmTr_v1...	RNA biosynthesis.organelle...	0.02	Archaeplastida
GSVIVT01022213001	No alias	RNA biosynthesis.organelle...	0.02	Archaeplastida
Gb_07257	No alias	TAC15 cofactor of plastid-encoded RNA polymerase....	0.04	Archaeplastida
Gb_15878	No alias	transcription factor (mTERF)	0.02	Archaeplastida
Gb_26176	No alias	transcription factor (mTERF)	0.02	Archaeplastida
Gb_26213	No alias	transcription factor (mTERF)	0.03	Archaeplastida
LOC_Os04g54510.1	No alias	transcription factor (mTERF)	0.03	Archaeplastida
LOC_Os05g33460.2	No alias	transcription factor (mTERF)	0.04	Archaeplastida
LOC_Os06g12040.1	No alias	transcription factor (mTERF)	0.02	Archaeplastida
LOC_Os06g12060.1	No alias	transcription factor (mTERF)	0.03	Archaeplastida
LOC_Os06g12110.1	No alias	transcription factor (mTERF)	0.04	Archaeplastida
LOC_Os07g24090.1	No alias	transcription factor (mTERF)	0.04	Archaeplastida
MA_10041174g0010	No alias	transcription factor (mTERF)	0.02	Archaeplastida
MA_10436066g0010	No alias	transcription factor (mTERF)	0.02	Archaeplastida
MA_178046g0010	No alias	transcription factor (mTERF)	0.02	Archaeplastida
MA_192398g0010	No alias	transcription factor (mTERF)	0.03	Archaeplastida
MA_3151g0010	No alias	transcription factor (mTERF)	0.02	Archaeplastida
MA_31885g0010	No alias	transcription factor (mTERF)	0.02	Archaeplastida
MA_493420g0010	No alias	transcription factor (mTERF)	0.02	Archaeplastida
MA_714651g0010	No alias	transcription factor (mTERF)	0.02	Archaeplastida
MA_7539255g0010	No alias	no hits & (original description: none)	0.02	Archaeplastida
MA_81581g0010	No alias	transcription factor (mTERF)	0.02	Archaeplastida
MA_92135g0010	No alias	transcription factor (mTERF)	0.03	Archaeplastida
Smo410501	No alias	RNA biosynthesis.organelle...	0.03	Archaeplastida
Solyc04g011700.2.1	No alias	transcription factor (mTERF)	0.03	Archaeplastida
Solyc04g051880.3.1	No alias	transcription factor (mTERF)	0.03	Archaeplastida
Solyc04g072500.1.1	No alias	transcription factor (mTERF)	0.02	Archaeplastida
Solyc04g072520.3.1	No alias	transcription factor (mTERF)	0.03	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	None	Extended
MF	GO:0003690	double-stranded DNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003682	chromatin binding	IEP	Neighborhood
MF	GO:0004379	glycylpeptide N-tetradecanoyltransferase activity	IEP	Neighborhood
MF	GO:0004519	endonuclease activity	IEP	Neighborhood
MF	GO:0004521	endoribonuclease activity	IEP	Neighborhood
MF	GO:0004523	RNA-DNA hybrid ribonuclease activity	IEP	Neighborhood
MF	GO:0004540	ribonuclease activity	IEP	Neighborhood
CC	GO:0005667	transcription factor complex	IEP	Neighborhood
CC	GO:0005956	protein kinase CK2 complex	IEP	Neighborhood
MF	GO:0008270	zinc ion binding	IEP	Neighborhood
MF	GO:0016891	endoribonuclease activity, producing 5'-phosphomonoesters	IEP	Neighborhood
MF	GO:0016893	endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters	IEP	Neighborhood
MF	GO:0019107	myristoyltransferase activity	IEP	Neighborhood
MF	GO:0019207	kinase regulator activity	IEP	Neighborhood
MF	GO:0019887	protein kinase regulator activity	IEP	Neighborhood
MF	GO:0043169	cation binding	IEP	Neighborhood
MF	GO:0046872	metal ion binding	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR003690	MTERF	143	338
IPR003690	MTERF	78	224

External Links

No external refs found!

Zm00001e027097_P001

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation