1. Home
  2. Species
  3. Arabidopsis thaliana
  4. Sequence
  5. AT3G42960

AT3G42960 (ATA1, TA1, ASD)


Aliases : ATA1, TA1, ASD

Description : TAPETUM 1


Gene families : OG0000154 (Archaeplastida) Phylogenetic Tree(s): OG0000154_tree ,
OG_05_0000088 (LandPlants) Phylogenetic Tree(s): OG_05_0000088_tree ,
OG_06_0015038 (SeedPlants) Phylogenetic Tree(s): OG_06_0015038_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT3G42960
Cluster HCCA: Cluster_5

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00003p00190670 evm_27.TU.AmTr_v1... Short-chain dehydrogenase reductase 3b OS=Arabidopsis thaliana 0.04 Archaeplastida
AMTR_s00030p00243810 evm_27.TU.AmTr_v1... Secoisolariciresinol dehydrogenase (Fragment)... 0.02 Archaeplastida
AMTR_s00030p00244570 evm_27.TU.AmTr_v1... Secoisolariciresinol dehydrogenase (Fragment)... 0.03 Archaeplastida
AMTR_s00044p00056720 evm_27.TU.AmTr_v1... Short-chain dehydrogenase reductase ATA1 OS=Arabidopsis thaliana 0.06 Archaeplastida
AT3G26760 No alias NAD(P)-binding Rossmann-fold superfamily protein 0.03 Archaeplastida
AT3G26770 No alias NAD(P)-binding Rossmann-fold superfamily protein 0.02 Archaeplastida
AT3G29250 No alias NAD(P)-binding Rossmann-fold superfamily protein 0.05 Archaeplastida
GSVIVT01028200001 No alias Short-chain dehydrogenase reductase 3b OS=Arabidopsis thaliana 0.05 Archaeplastida
GSVIVT01033915001 No alias Secoisolariciresinol dehydrogenase (Fragment)... 0.01 Archaeplastida
GSVIVT01033919001 No alias Secoisolariciresinol dehydrogenase (Fragment)... 0.01 Archaeplastida
Gb_05035 No alias Secoisolariciresinol dehydrogenase (Fragment)... 0.05 Archaeplastida
Gb_05036 No alias Secoisolariciresinol dehydrogenase (Fragment)... 0.02 Archaeplastida
Gb_07560 No alias Short-chain dehydrogenase reductase 2a OS=Arabidopsis... 0.02 Archaeplastida
Gb_13572 No alias Short-chain dehydrogenase reductase 2a OS=Arabidopsis... 0.02 Archaeplastida
Gb_17570 No alias Short-chain dehydrogenase reductase ATA1 OS=Arabidopsis... 0.05 Archaeplastida
Gb_19302 No alias Short-chain dehydrogenase reductase 3b OS=Arabidopsis... 0.02 Archaeplastida
Gb_19313 No alias Short-chain dehydrogenase reductase 2a OS=Arabidopsis... 0.04 Archaeplastida
Gb_25236 No alias Momilactone A synthase OS=Oryza sativa subsp. japonica... 0.04 Archaeplastida
Gb_30464 No alias no hits & (original description: none) 0.01 Archaeplastida
Gb_30884 No alias Short-chain dehydrogenase reductase 2a OS=Arabidopsis... 0.04 Archaeplastida
Gb_30885 No alias Short-chain dehydrogenase reductase 2a OS=Arabidopsis... 0.04 Archaeplastida
Gb_34140 No alias Momilactone A synthase OS=Oryza sativa subsp. japonica... 0.02 Archaeplastida
Gb_35796 No alias Secoisolariciresinol dehydrogenase (Fragment)... 0.05 Archaeplastida
Gb_35889 No alias Secoisolariciresinol dehydrogenase (Fragment)... 0.04 Archaeplastida
Gb_40683 No alias Short-chain dehydrogenase reductase ATA1 OS=Arabidopsis... 0.04 Archaeplastida
LOC_Os03g18740.1 No alias Sex determination protein tasselseed-2 OS=Zea mays... 0.03 Archaeplastida
LOC_Os03g61740.1 No alias Short-chain dehydrogenase reductase 4 OS=Arabidopsis... 0.03 Archaeplastida
LOC_Os04g10000.1 No alias Momilactone A synthase OS=Oryza sativa subsp. japonica... 0.05 Archaeplastida
LOC_Os04g10010.1 No alias Momilactone A synthase OS=Oryza sativa subsp. japonica... 0.04 Archaeplastida
LOC_Os07g46840.1 No alias Tropinone reductase-like 2 OS=Erythroxylum coca... 0.06 Archaeplastida
LOC_Os07g46846.1 No alias Short-chain dehydrogenase reductase 4 OS=Arabidopsis... 0.03 Archaeplastida
LOC_Os07g46860.1 No alias Momilactone A synthase OS=Oryza sativa subsp. japonica... 0.05 Archaeplastida
LOC_Os07g46870.1 No alias Momilactone A synthase OS=Oryza sativa subsp. japonica... 0.02 Archaeplastida
LOC_Os07g46910.1 No alias Tropinone reductase-like 2 OS=Erythroxylum coca... 0.05 Archaeplastida
LOC_Os07g46920.1 No alias Secoisolariciresinol dehydrogenase (Fragment)... 0.03 Archaeplastida
LOC_Os07g46970.1 No alias Secoisolariciresinol dehydrogenase (Fragment)... 0.03 Archaeplastida
LOC_Os11g32030.1 No alias Short-chain dehydrogenase reductase 2a OS=Arabidopsis... 0.03 Archaeplastida
LOC_Os12g16010.1 No alias Short-chain dehydrogenase reductase 4 OS=Arabidopsis... 0.04 Archaeplastida
MA_10436701g0010 No alias Short-chain dehydrogenase reductase 2a OS=Arabidopsis... 0.02 Archaeplastida
MA_10436701g0020 No alias Short-chain dehydrogenase reductase 2a OS=Arabidopsis... 0.04 Archaeplastida
MA_107740g0010 No alias Short-chain dehydrogenase reductase ATA1 OS=Arabidopsis... 0.07 Archaeplastida
MA_112182g0010 No alias Short-chain dehydrogenase reductase 2a OS=Arabidopsis... 0.03 Archaeplastida
MA_164148g0010 No alias Short-chain dehydrogenase reductase 2a OS=Arabidopsis... 0.03 Archaeplastida
MA_2492g0010 No alias xanthoxin oxidase (ABA2) 0.02 Archaeplastida
MA_932914g0010 No alias no hits & (original description: none) 0.01 Archaeplastida
MA_97011g0010 No alias Short-chain dehydrogenase reductase 2a OS=Arabidopsis... 0.03 Archaeplastida
Mp1g17390.1 No alias Secoisolariciresinol dehydrogenase (Fragment)... 0.02 Archaeplastida
Mp3g24670.1 No alias Secoisolariciresinol dehydrogenase (Fragment)... 0.01 Archaeplastida
Mp3g24680.1 No alias Momilactone A synthase OS=Oryza sativa subsp. japonica... 0.04 Archaeplastida
Mp3g24690.1 No alias Momilactone A synthase OS=Oryza sativa subsp. japonica... 0.05 Archaeplastida
Mp3g24700.1 No alias Zerumbone synthase OS=Zingiber zerumbet... 0.02 Archaeplastida
Mp5g00680.1 No alias Short-chain dehydrogenase reductase 3c OS=Arabidopsis... 0.02 Archaeplastida
Mp5g02670.1 No alias Zerumbone synthase OS=Zingiber zerumbet... 0.04 Archaeplastida
Mp6g11590.1 No alias Short-chain dehydrogenase reductase 4 OS=Arabidopsis... 0.02 Archaeplastida
Smo79955 No alias Short-chain dehydrogenase reductase 2a OS=Arabidopsis thaliana 0.02 Archaeplastida
Solyc01g005500.3.1 No alias Secoisolariciresinol dehydrogenase (Fragment)... 0.03 Archaeplastida
Solyc01g091660.3.1 No alias Short-chain dehydrogenase reductase 3b OS=Arabidopsis... 0.03 Archaeplastida
Solyc10g083170.2.1 No alias Secoisolariciresinol dehydrogenase (Fragment)... 0.02 Archaeplastida
Solyc11g018600.1.1 No alias Short-chain dehydrogenase reductase ATA1 OS=Arabidopsis... 0.18 Archaeplastida
Solyc12g056610.3.1 No alias Secoisolariciresinol dehydrogenase (Fragment)... 0.06 Archaeplastida
Solyc12g056700.2.1 No alias Secoisolariciresinol dehydrogenase (Fragment)... 0.03 Archaeplastida
Solyc12g056710.3.1 No alias Secoisolariciresinol dehydrogenase (Fragment)... 0.05 Archaeplastida
Zm00001e006254_P002 No alias Short-chain dehydrogenase reductase 4 OS=Arabidopsis... 0.02 Archaeplastida
Zm00001e021516_P001 No alias Short-chain dehydrogenase reductase 2a OS=Arabidopsis... 0.02 Archaeplastida
Zm00001e035437_P002 No alias Secoisolariciresinol dehydrogenase (Fragment)... 0.05 Archaeplastida

Type GO Term Name Evidence Source
CC GO:0005575 cellular_component ND Interproscan
BP GO:0009908 flower development ISS Interproscan
BP GO:0010584 pollen exine formation RCA Interproscan
MF GO:0016491 oxidoreductase activity ISS Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000038 very long-chain fatty acid metabolic process IEP Neighborhood
MF GO:0003747 translation release factor activity IEP Neighborhood
MF GO:0004467 long-chain fatty acid-CoA ligase activity IEP Neighborhood
MF GO:0004497 monooxygenase activity IEP Neighborhood
CC GO:0005576 extracellular region IEP Neighborhood
CC GO:0005788 endoplasmic reticulum lumen IEP Neighborhood
BP GO:0006415 translational termination IEP Neighborhood
BP GO:0006869 lipid transport IEP Neighborhood
BP GO:0007275 multicellular organism development IEP Neighborhood
MF GO:0008079 translation termination factor activity IEP Neighborhood
BP GO:0008216 spermidine metabolic process IEP Neighborhood
MF GO:0008289 lipid binding IEP Neighborhood
BP GO:0009555 pollen development IEP Neighborhood
BP GO:0009556 microsporogenesis IEP Neighborhood
BP GO:0009698 phenylpropanoid metabolic process IEP Neighborhood
BP GO:0009699 phenylpropanoid biosynthetic process IEP Neighborhood
BP GO:0009820 alkaloid metabolic process IEP Neighborhood
BP GO:0009821 alkaloid biosynthetic process IEP Neighborhood
BP GO:0009943 adaxial/abaxial axis specification IEP Neighborhood
BP GO:0010152 pollen maturation IEP Neighborhood
BP GO:0010199 organ boundary specification between lateral organs and the meristem IEP Neighborhood
MF GO:0015271 outward rectifier potassium channel activity IEP Neighborhood
MF GO:0015645 fatty acid ligase activity IEP Neighborhood
MF GO:0016207 4-coumarate-CoA ligase activity IEP Neighborhood
MF GO:0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor IEP Neighborhood
MF GO:0016621 cinnamoyl-CoA reductase activity IEP Neighborhood
MF GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEP Neighborhood
MF GO:0016709 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen IEP Neighborhood
MF GO:0016713 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced iron-sulfur protein as one donor, and incorporation of one atom of oxygen IEP Neighborhood
MF GO:0016746 transferase activity, transferring acyl groups IEP Neighborhood
MF GO:0016747 transferase activity, transferring acyl groups other than amino-acyl groups IEP Neighborhood
MF GO:0016829 lyase activity IEP Neighborhood
MF GO:0016840 carbon-nitrogen lyase activity IEP Neighborhood
MF GO:0016843 amine-lyase activity IEP Neighborhood
MF GO:0016844 strictosidine synthase activity IEP Neighborhood
MF GO:0016903 oxidoreductase activity, acting on the aldehyde or oxo group of donors IEP Neighborhood
MF GO:0018685 alkane 1-monooxygenase activity IEP Neighborhood
MF GO:0019825 oxygen binding IEP Neighborhood
BP GO:0030638 polyketide metabolic process IEP Neighborhood
BP GO:0030639 polyketide biosynthetic process IEP Neighborhood
MF GO:0031956 medium-chain fatty acid-CoA ligase activity IEP Neighborhood
BP GO:0032984 protein-containing complex disassembly IEP Neighborhood
BP GO:0034293 sexual sporulation IEP Neighborhood
BP GO:0035337 fatty-acyl-CoA metabolic process IEP Neighborhood
BP GO:0035384 thioester biosynthetic process IEP Neighborhood
BP GO:0035445 borate transmembrane transport IEP Neighborhood
BP GO:0042335 cuticle development IEP Neighborhood
MF GO:0042409 caffeoyl-CoA O-methyltransferase activity IEP Neighborhood
BP GO:0043624 cellular protein complex disassembly IEP Neighborhood
BP GO:0043934 sporulation IEP Neighborhood
BP GO:0046713 borate transport IEP Neighborhood
MF GO:0046715 active borate transmembrane transporter activity IEP Neighborhood
BP GO:0046949 fatty-acyl-CoA biosynthetic process IEP Neighborhood
BP GO:0048229 gametophyte development IEP Neighborhood
BP GO:0048236 plant-type sporogenesis IEP Neighborhood
BP GO:0048316 seed development IEP Neighborhood
BP GO:0048658 anther wall tapetum development IEP Neighborhood
BP GO:0048859 formation of anatomical boundary IEP Neighborhood
MF GO:0050734 hydroxycinnamoyltransferase activity IEP Neighborhood
BP GO:0051321 meiotic cell cycle IEP Neighborhood
BP GO:0051791 medium-chain fatty acid metabolic process IEP Neighborhood
BP GO:0051792 medium-chain fatty acid biosynthetic process IEP Neighborhood
BP GO:0071616 acyl-CoA biosynthetic process IEP Neighborhood
MF GO:0072532 tri-(feruloyl or hydroxyferuloyl) spermidine meta-hydroxylase activity IEP Neighborhood
MF GO:0072533 tri-(coumaroyl or caffeoyl) spermidine meta-hydroxylase activity IEP Neighborhood
MF GO:0072547 tricoumaroylspermidine meta-hydroxylase activity IEP Neighborhood
MF GO:0072548 dicoumaroyl monocaffeoyl spermidine meta-hydroxylase activity IEP Neighborhood
MF GO:0072549 monocoumaroyl dicaffeoyl spermidine meta-hydroxylase activity IEP Neighborhood
MF GO:0072550 triferuloylspermidine meta-hydroxylase activity IEP Neighborhood
MF GO:0072551 diferuloyl mono-(hydroxyferuloyl) spermidine meta-hydroxylase activity IEP Neighborhood
MF GO:0072552 monoferuloyl di-(hydroxyferuloyl) spermidine meta-hydroxylase activity IEP Neighborhood
MF GO:0080012 trihydroxyferuloyl spermidine O-methyltransferase activity IEP Neighborhood
MF GO:0080019 fatty-acyl-CoA reductase (alcohol-forming) activity IEP Neighborhood
MF GO:0080030 methyl indole-3-acetate esterase activity IEP Neighborhood
MF GO:0080072 spermidine:sinapoyl CoA N-acyltransferase activity IEP Neighborhood
MF GO:0080073 spermidine:coumaroyl CoA N-acyltransferase activity IEP Neighborhood
MF GO:0080074 spermidine:caffeoyl CoA N-acyltransferase activity IEP Neighborhood
MF GO:0080075 spermidine:feruloyl CoA N-acyltransferase activity IEP Neighborhood
MF GO:0080076 caffeoyl CoA:S-adenosyl-L-methionine O-methyltransferase activity IEP Neighborhood
MF GO:0080077 trihydroxyferuloyl spermidine:S-adenosyl-L-methionine O-methyltransferase activity IEP Neighborhood
MF GO:0080078 tricaffeoyl spermidine:S-adenosyl-L-methionine O-methyltransferase activity IEP Neighborhood
BP GO:0080088 spermidine hydroxycinnamate conjugate biosynthetic process IEP Neighborhood
BP GO:0080110 sporopollenin biosynthetic process IEP Neighborhood
MF GO:0090439 tetraketide alpha-pyrone synthase activity IEP Neighborhood
BP GO:0090691 formation of plant organ boundary IEP Neighborhood
BP GO:0098661 inorganic anion transmembrane transport IEP Neighborhood
BP GO:1900150 regulation of defense response to fungus IEP Neighborhood

No InterPro domains available for this sequence

No external refs found!