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  5. Zm00001e027517_P001

Zm00001e027517_P001


Description : Uncharacterized CRM domain-containing protein At3g25440, chloroplastic OS=Arabidopsis thaliana (sp|q67xl4|y3544_arath : 103.0)


Gene families : OG0001381 (Archaeplastida) Phylogenetic Tree(s): OG0001381_tree ,
OG_05_0000914 (LandPlants) Phylogenetic Tree(s): OG_05_0000914_tree ,
OG_06_0005833 (SeedPlants) Phylogenetic Tree(s): OG_06_0005833_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e027517_P001
Cluster HCCA: Cluster_216

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00049p00218010 evm_27.TU.AmTr_v1... Uncharacterized CRM domain-containing protein At3g25440,... 0.03 Archaeplastida
AMTR_s00066p00206210 evm_27.TU.AmTr_v1... Uncharacterized CRM domain-containing protein At3g25440,... 0.03 Archaeplastida
AT3G27550 No alias RNA-binding CRS1 / YhbY (CRM) domain protein 0.05 Archaeplastida
AT4G13070 No alias RNA-binding CRS1 / YhbY (CRM) domain protein 0.05 Archaeplastida
GSVIVT01032387001 No alias Uncharacterized CRM domain-containing protein At3g25440,... 0.02 Archaeplastida
Gb_06284 No alias Uncharacterized CRM domain-containing protein At3g25440,... 0.03 Archaeplastida
Gb_20452 No alias Uncharacterized CRM domain-containing protein At3g25440,... 0.05 Archaeplastida
Gb_39033 No alias Uncharacterized CRM domain-containing protein At3g25440,... 0.04 Archaeplastida
LOC_Os05g05300.1 No alias Uncharacterized CRM domain-containing protein At3g25440,... 0.07 Archaeplastida
LOC_Os06g20030.1 No alias Uncharacterized CRM domain-containing protein At3g25440,... 0.05 Archaeplastida
Mp2g03710.1 No alias Uncharacterized CRM domain-containing protein At3g25440,... 0.02 Archaeplastida
Pp3c3_29500V3.1 No alias RNA-binding CRS1 / YhbY (CRM) domain protein 0.06 Archaeplastida
Solyc09g005270.3.1 No alias Uncharacterized CRM domain-containing protein At3g25440,... 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEP Neighborhood
MF GO:0003724 RNA helicase activity IEP Neighborhood
MF GO:0003729 mRNA binding IEP Neighborhood
MF GO:0004386 helicase activity IEP Neighborhood
CC GO:0005685 U1 snRNP IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006376 mRNA splice site selection IEP Neighborhood
BP GO:0006396 RNA processing IEP Neighborhood
BP GO:0006397 mRNA processing IEP Neighborhood
BP GO:0006725 cellular aromatic compound metabolic process IEP Neighborhood
BP GO:0009451 RNA modification IEP Neighborhood
MF GO:0009982 pseudouridine synthase activity IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
BP GO:0016071 mRNA metabolic process IEP Neighborhood
MF GO:0016866 intramolecular transferase activity IEP Neighborhood
BP GO:0022618 ribonucleoprotein complex assembly IEP Neighborhood
CC GO:0030532 small nuclear ribonucleoprotein complex IEP Neighborhood
BP GO:0046483 heterocycle metabolic process IEP Neighborhood
BP GO:0071826 ribonucleoprotein complex subunit organization IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
CC GO:0097525 spliceosomal snRNP complex IEP Neighborhood
CC GO:0120114 Sm-like protein family complex IEP Neighborhood
BP GO:1901360 organic cyclic compound metabolic process IEP Neighborhood
InterPro domains Description Start Stop
IPR001890 RNA-binding_CRM 133 217
No external refs found!