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  5. Zm00001e027603_P003

Zm00001e027603_P003


Description : RSZ32/33 RNA splicing factor


Gene families : OG0002802 (Archaeplastida) Phylogenetic Tree(s): OG0002802_tree ,
OG_05_0002795 (LandPlants) Phylogenetic Tree(s): OG_05_0002795_tree ,
OG_06_0003143 (SeedPlants) Phylogenetic Tree(s): OG_06_0003143_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e027603_P003
Cluster HCCA: Cluster_276

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00007p00189640 evm_27.TU.AmTr_v1... RNA processing.RNA splicing.spliceosome-associated... 0.04 Archaeplastida
AT2G37340 RSZ33,... arginine/serine-rich zinc knuckle-containing protein 33 0.05 Archaeplastida
Cpa|evm.model.tig00000802.14 No alias No description available 0.03 Archaeplastida
Cpa|evm.model.tig00021531.8 No alias RNA processing.RNA splicing.spliceosome-associated... 0.02 Archaeplastida
Gb_27277 No alias RSZ32/33 RNA splicing factor 0.03 Archaeplastida
Gb_30496 No alias RSZ32/33 RNA splicing factor 0.02 Archaeplastida
LOC_Os01g06290.1 No alias RSZ32/33 RNA splicing factor 0.06 Archaeplastida
LOC_Os03g17710.1 No alias RSZ32/33 RNA splicing factor 0.02 Archaeplastida
LOC_Os05g02880.1 No alias RSZ32/33 RNA splicing factor 0.05 Archaeplastida
Mp6g01120.1 No alias RSZ32/33 RNA splicing factor 0.03 Archaeplastida
Solyc05g054920.4.1 No alias RSZ32/33 RNA splicing factor 0.08 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003682 chromatin binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0016409 palmitoyltransferase activity IEP Neighborhood
MF GO:0061630 ubiquitin protein ligase activity IEP Neighborhood
MF GO:0061659 ubiquitin-like protein ligase activity IEP Neighborhood
InterPro domains Description Start Stop
IPR000504 RRM_dom 13 74
IPR001878 Znf_CCHC 103 118
IPR001878 Znf_CCHC 124 140
No external refs found!