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  5. Zm00001e027838_P001

Zm00001e027838_P001


Description : starch branching enzyme


Gene families : OG0001006 (Archaeplastida) Phylogenetic Tree(s): OG0001006_tree ,
OG_05_0008440 (LandPlants) Phylogenetic Tree(s): OG_05_0008440_tree ,
OG_06_0009322 (SeedPlants) Phylogenetic Tree(s): OG_06_0009322_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e027838_P001
Cluster HCCA: Cluster_199

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00055p00224220 evm_27.TU.AmTr_v1... Carbohydrate metabolism.starch... 0.06 Archaeplastida
AT3G20440 EMB2729, BE1 Alpha amylase family protein 0.05 Archaeplastida
Cpa|evm.model.tig00000981.14 No alias Carbohydrate metabolism.starch... 0.01 Archaeplastida
GSVIVT01037695001 No alias Carbohydrate metabolism.starch... 0.06 Archaeplastida
Gb_38481 No alias starch branching enzyme 0.07 Archaeplastida
LOC_Os06g26234.1 No alias starch branching enzyme 0.03 Archaeplastida
MA_10435727g0010 No alias 1,4-alpha-glucan-branching enzyme 3,... 0.03 Archaeplastida
Mp3g21170.1 No alias starch branching enzyme 0.02 Archaeplastida
Pp3c1_1810V3.1 No alias Alpha amylase family protein 0.03 Archaeplastida
Solyc07g064830.3.1 No alias starch branching enzyme 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEA Interproscan
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEA Interproscan
BP GO:0005975 carbohydrate metabolic process IEA Interproscan
MF GO:0043169 cation binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003690 double-stranded DNA binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0003887 DNA-directed DNA polymerase activity IEP Neighborhood
MF GO:0004518 nuclease activity IEP Neighborhood
MF GO:0004527 exonuclease activity IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006260 DNA replication IEP Neighborhood
BP GO:0006725 cellular aromatic compound metabolic process IEP Neighborhood
MF GO:0008173 RNA methyltransferase activity IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
MF GO:0008408 3'-5' exonuclease activity IEP Neighborhood
MF GO:0016597 amino acid binding IEP Neighborhood
MF GO:0016740 transferase activity IEP Neighborhood
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Neighborhood
MF GO:0016743 carboxyl- or carbamoyltransferase activity IEP Neighborhood
MF GO:0016779 nucleotidyltransferase activity IEP Neighborhood
MF GO:0031406 carboxylic acid binding IEP Neighborhood
MF GO:0034061 DNA polymerase activity IEP Neighborhood
MF GO:0043177 organic acid binding IEP Neighborhood
BP GO:0046483 heterocycle metabolic process IEP Neighborhood
MF GO:0046914 transition metal ion binding IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
MF GO:0140097 catalytic activity, acting on DNA IEP Neighborhood
BP GO:1901360 organic cyclic compound metabolic process IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
InterPro domains Description Start Stop
IPR006047 Glyco_hydro_13_cat_dom 428 502
IPR006048 A-amylase/branching_C 803 893
IPR004193 Glyco_hydro_13_N 126 200
No external refs found!