- Species
- Tools
- Expression Profiles
- Compare profiles
- Create heatmap
- Export expression levels
- Expression Specificity
- Compare specificities
- Find specific profiles
- Co-expression Networks
- Create custom network
- Find enriched clusters
- Search
Description : component RNPS1 of RNA quality control Exon Junction complex
Gene families : OG0003818 (Archaeplastida) Phylogenetic Tree(s): OG0003818_tree ,
OG_05_0002920 (LandPlants) Phylogenetic Tree(s): OG_05_0002920_tree ,
OG_06_0004355 (SeedPlants) Phylogenetic Tree(s): OG_06_0004355_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: Zm00001e028289_P001 | |
| Cluster | HCCA: Cluster_132 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| Cpa|evm.model.tig00021222.7 | No alias | RNA processing.RNA quality control Exon Junction complex... | 0.02 | Archaeplastida | |
| Cre03.g164950 | No alias | RNA processing.RNA quality control Exon Junction complex... | 0.03 | Archaeplastida | |
| GSVIVT01020424001 | No alias | RNA processing.RNA quality control Exon Junction complex... | 0.03 | Archaeplastida | |
| Gb_20779 | No alias | component RNPS1 of RNA quality control Exon Junction complex | 0.03 | Archaeplastida | |
| MA_10428760g0010 | No alias | no hits & (original description: none) | 0.03 | Archaeplastida | |
| MA_3280g0020 | No alias | component RNPS1 of RNA quality control Exon Junction complex | 0.04 | Archaeplastida | |
| Mp4g11580.1 | No alias | component RNPS1 of RNA quality control Exon Junction complex | 0.02 | Archaeplastida | |
| Smo446044 | No alias | RNA processing.RNA quality control Exon Junction complex... | 0.03 | Archaeplastida | |
| Solyc10g005590.4.1 | No alias | component RNPS1 of RNA quality control Exon Junction complex | 0.07 | Archaeplastida |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003676 | nucleic acid binding | IEA | Interproscan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003690 | double-stranded DNA binding | IEP | Neighborhood |
| MF | GO:0003723 | RNA binding | IEP | Neighborhood |
| MF | GO:0003743 | translation initiation factor activity | IEP | Neighborhood |
| MF | GO:0005085 | guanyl-nucleotide exchange factor activity | IEP | Neighborhood |
| MF | GO:0005086 | ARF guanyl-nucleotide exchange factor activity | IEP | Neighborhood |
| MF | GO:0008097 | 5S rRNA binding | IEP | Neighborhood |
| BP | GO:0009966 | regulation of signal transduction | IEP | Neighborhood |
| BP | GO:0010646 | regulation of cell communication | IEP | Neighborhood |
| MF | GO:0016409 | palmitoyltransferase activity | IEP | Neighborhood |
| MF | GO:0019843 | rRNA binding | IEP | Neighborhood |
| BP | GO:0023051 | regulation of signaling | IEP | Neighborhood |
| BP | GO:0032012 | regulation of ARF protein signal transduction | IEP | Neighborhood |
| BP | GO:0046578 | regulation of Ras protein signal transduction | IEP | Neighborhood |
| BP | GO:0048583 | regulation of response to stimulus | IEP | Neighborhood |
| BP | GO:0051056 | regulation of small GTPase mediated signal transduction | IEP | Neighborhood |
| BP | GO:1902531 | regulation of intracellular signal transduction | IEP | Neighborhood |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR000504 | RRM_dom | 106 | 174 |
| No external refs found! |