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  5. Zm00001e028312_P001

Zm00001e028312_P001


Description : PH, RCC1 and FYVE domains-containing protein 1 OS=Arabidopsis thaliana (sp|q947d2|praf1_arath : 840.0)


Gene families : OG0000543 (Archaeplastida) Phylogenetic Tree(s): OG0000543_tree ,
OG_05_0000407 (LandPlants) Phylogenetic Tree(s): OG_05_0000407_tree ,
OG_06_0000284 (SeedPlants) Phylogenetic Tree(s): OG_06_0000284_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e028312_P001
Cluster HCCA: Cluster_61

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00030p00120950 evm_27.TU.AmTr_v1... PH, RCC1 and FYVE domains-containing protein 1... 0.02 Archaeplastida
AMTR_s00063p00100200 evm_27.TU.AmTr_v1... PH, RCC1 and FYVE domains-containing protein 1... 0.02 Archaeplastida
AT1G76950 PRAF1 Regulator of chromosome condensation (RCC1) family with... 0.04 Archaeplastida
AT5G12350 No alias Regulator of chromosome condensation (RCC1) family with... 0.06 Archaeplastida
AT5G19420 No alias Regulator of chromosome condensation (RCC1) family with... 0.03 Archaeplastida
Cre16.g691050 No alias PH, RCC1 and FYVE domains-containing protein 1... 0.04 Archaeplastida
GSVIVT01001675001 No alias PH, RCC1 and FYVE domains-containing protein 1... 0.08 Archaeplastida
Gb_13554 No alias PH, RCC1 and FYVE domains-containing protein 1... 0.04 Archaeplastida
LOC_Os01g72320.1 No alias PH, RCC1 and FYVE domains-containing protein 1... 0.05 Archaeplastida
LOC_Os05g31920.2 No alias PH, RCC1 and FYVE domains-containing protein 1... 0.03 Archaeplastida
MA_10435870g0010 No alias no hits & (original description: none) 0.05 Archaeplastida
MA_54149g0010 No alias PH, RCC1 and FYVE domains-containing protein 1... 0.08 Archaeplastida
Mp1g24610.1 No alias PH, RCC1 and FYVE domains-containing protein 1... 0.05 Archaeplastida
Pp3c14_4640V3.1 No alias Regulator of chromosome condensation (RCC1) family with... 0.04 Archaeplastida
Pp3c14_4760V3.1 No alias Regulator of chromosome condensation (RCC1) family with... 0.06 Archaeplastida
Smo112120 No alias PH, RCC1 and FYVE domains-containing protein 1... 0.04 Archaeplastida
Solyc04g071040.4.1 No alias PH, RCC1 and FYVE domains-containing protein 1... 0.03 Archaeplastida
Solyc11g065120.3.1 No alias PH, RCC1 and FYVE domains-containing protein 1... 0.12 Archaeplastida
Zm00001e028276_P001 No alias PH, RCC1 and FYVE domains-containing protein 1... 0.05 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0046872 metal ion binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000139 Golgi membrane IEP Neighborhood
MF GO:0000155 phosphorelay sensor kinase activity IEP Neighborhood
MF GO:0000166 nucleotide binding IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0004540 ribonuclease activity IEP Neighborhood
MF GO:0004652 polynucleotide adenylyltransferase activity IEP Neighborhood
MF GO:0004672 protein kinase activity IEP Neighborhood
MF GO:0004673 protein histidine kinase activity IEP Neighborhood
MF GO:0004721 phosphoprotein phosphatase activity IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
MF GO:0005524 ATP binding IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006325 chromatin organization IEP Neighborhood
BP GO:0006354 DNA-templated transcription, elongation IEP Neighborhood
BP GO:0006368 transcription elongation from RNA polymerase II promoter IEP Neighborhood
BP GO:0006464 cellular protein modification process IEP Neighborhood
BP GO:0006468 protein phosphorylation IEP Neighborhood
BP GO:0006725 cellular aromatic compound metabolic process IEP Neighborhood
BP GO:0006793 phosphorus metabolic process IEP Neighborhood
BP GO:0006796 phosphate-containing compound metabolic process IEP Neighborhood
BP GO:0006807 nitrogen compound metabolic process IEP Neighborhood
BP GO:0006886 intracellular protein transport IEP Neighborhood
BP GO:0006906 vesicle fusion IEP Neighborhood
CC GO:0008023 transcription elongation factor complex IEP Neighborhood
BP GO:0008104 protein localization IEP Neighborhood
MF GO:0008138 protein tyrosine/serine/threonine phosphatase activity IEP Neighborhood
MF GO:0008144 drug binding IEP Neighborhood
BP GO:0008150 biological_process IEP Neighborhood
BP GO:0009987 cellular process IEP Neighborhood
BP GO:0015031 protein transport IEP Neighborhood
BP GO:0015833 peptide transport IEP Neighborhood
BP GO:0016043 cellular component organization IEP Neighborhood
BP GO:0016050 vesicle organization IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
BP GO:0016192 vesicle-mediated transport IEP Neighborhood
MF GO:0016301 kinase activity IEP Neighborhood
BP GO:0016310 phosphorylation IEP Neighborhood
BP GO:0016311 dephosphorylation IEP Neighborhood
BP GO:0016569 covalent chromatin modification IEP Neighborhood
BP GO:0016570 histone modification IEP Neighborhood
CC GO:0016593 Cdc73/Paf1 complex IEP Neighborhood
MF GO:0016740 transferase activity IEP Neighborhood
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP Neighborhood
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP Neighborhood
MF GO:0016775 phosphotransferase activity, nitrogenous group as acceptor IEP Neighborhood
MF GO:0016779 nucleotidyltransferase activity IEP Neighborhood
MF GO:0017076 purine nucleotide binding IEP Neighborhood
BP GO:0019538 protein metabolic process IEP Neighborhood
CC GO:0030117 membrane coat IEP Neighborhood
MF GO:0030554 adenyl nucleotide binding IEP Neighborhood
CC GO:0031090 organelle membrane IEP Neighborhood
MF GO:0032553 ribonucleotide binding IEP Neighborhood
MF GO:0032555 purine ribonucleotide binding IEP Neighborhood
MF GO:0032559 adenyl ribonucleotide binding IEP Neighborhood
BP GO:0032774 RNA biosynthetic process IEP Neighborhood
CC GO:0032991 protein-containing complex IEP Neighborhood
BP GO:0033036 macromolecule localization IEP Neighborhood
BP GO:0034641 cellular nitrogen compound metabolic process IEP Neighborhood
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP Neighborhood
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Neighborhood
MF GO:0036094 small molecule binding IEP Neighborhood
BP GO:0036211 protein modification process IEP Neighborhood
BP GO:0042886 amide transport IEP Neighborhood
MF GO:0043168 anion binding IEP Neighborhood
BP GO:0043170 macromolecule metabolic process IEP Neighborhood
BP GO:0043412 macromolecule modification IEP Neighborhood
BP GO:0043631 RNA polyadenylation IEP Neighborhood
BP GO:0044237 cellular metabolic process IEP Neighborhood
BP GO:0044238 primary metabolic process IEP Neighborhood
BP GO:0044260 cellular macromolecule metabolic process IEP Neighborhood
BP GO:0044267 cellular protein metabolic process IEP Neighborhood
CC GO:0044422 organelle part IEP Neighborhood
CC GO:0044424 intracellular part IEP Neighborhood
CC GO:0044428 nuclear part IEP Neighborhood
CC GO:0044444 cytoplasmic part IEP Neighborhood
CC GO:0044446 intracellular organelle part IEP Neighborhood
CC GO:0044451 nucleoplasm part IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
BP GO:0045184 establishment of protein localization IEP Neighborhood
BP GO:0046483 heterocycle metabolic process IEP Neighborhood
BP GO:0046907 intracellular transport IEP Neighborhood
BP GO:0048280 vesicle fusion with Golgi apparatus IEP Neighborhood
BP GO:0048284 organelle fusion IEP Neighborhood
BP GO:0051641 cellular localization IEP Neighborhood
BP GO:0051649 establishment of localization in cell IEP Neighborhood
BP GO:0061024 membrane organization IEP Neighborhood
BP GO:0061025 membrane fusion IEP Neighborhood
MF GO:0070566 adenylyltransferase activity IEP Neighborhood
BP GO:0071702 organic substance transport IEP Neighborhood
BP GO:0071704 organic substance metabolic process IEP Neighborhood
BP GO:0071705 nitrogen compound transport IEP Neighborhood
BP GO:0071840 cellular component organization or biogenesis IEP Neighborhood
BP GO:0090174 organelle membrane fusion IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
MF GO:0097367 carbohydrate derivative binding IEP Neighborhood
CC GO:0098588 bounding membrane of organelle IEP Neighborhood
CC GO:0098796 membrane protein complex IEP Neighborhood
MF GO:0140096 catalytic activity, acting on a protein IEP Neighborhood
MF GO:1901265 nucleoside phosphate binding IEP Neighborhood
BP GO:1901360 organic cyclic compound metabolic process IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
BP GO:1901564 organonitrogen compound metabolic process IEP Neighborhood
InterPro domains Description Start Stop
IPR013591 Brevis_radix_dom 1019 1073
IPR027988 BRX_N 912 946
IPR000306 Znf_FYVE 656 722
IPR000408 Reg_chr_condens 329 377
IPR000408 Reg_chr_condens 551 600
IPR000408 Reg_chr_condens 605 652
IPR000408 Reg_chr_condens 499 548
IPR000408 Reg_chr_condens 436 484
IPR000408 Reg_chr_condens 380 432
No external refs found!