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  5. Zm00001e028732_P001

Zm00001e028732_P001


Description : Pentatricopeptide repeat-containing protein At3g09060 OS=Arabidopsis thaliana (sp|q9ss81|pp221_arath : 557.0)


Gene families : OG0000198 (Archaeplastida) Phylogenetic Tree(s): OG0000198_tree ,
OG_05_0000086 (LandPlants) Phylogenetic Tree(s): OG_05_0000086_tree ,
OG_06_0017423 (SeedPlants) Phylogenetic Tree(s): OG_06_0017423_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e028732_P001
Cluster HCCA: Cluster_158

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00010p00259780 evm_27.TU.AmTr_v1... Putative pentatricopeptide repeat-containing protein... 0.05 Archaeplastida
AMTR_s00022p00130870 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At3g14580,... 0.03 Archaeplastida
AMTR_s00024p00204830 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At5g39710... 0.02 Archaeplastida
AMTR_s00029p00104100 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g61870,... 0.04 Archaeplastida
AMTR_s00029p00214000 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At3g09060... 0.04 Archaeplastida
AMTR_s00078p00041370 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At3g48810... 0.05 Archaeplastida
AMTR_s00111p00140430 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At4g01400,... 0.05 Archaeplastida
AT1G53330 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Archaeplastida
AT5G46100 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Archaeplastida
GSVIVT01008016001 No alias Putative pentatricopeptide repeat-containing protein... 0.04 Archaeplastida
Gb_00757 No alias Pentatricopeptide repeat-containing protein At5g46100... 0.04 Archaeplastida
Gb_05553 No alias group-II intron mitochondrial splicing factor (MISF74) 0.02 Archaeplastida
Gb_12002 No alias Pentatricopeptide repeat-containing protein At3g48810... 0.03 Archaeplastida
Gb_14900 No alias Pentatricopeptide repeat-containing protein At4g20090... 0.03 Archaeplastida
Gb_21920 No alias Pentatricopeptide repeat-containing protein At1g07740,... 0.03 Archaeplastida
Gb_23263 No alias Pentatricopeptide repeat-containing protein At5g46100... 0.04 Archaeplastida
Gb_35219 No alias Pentatricopeptide repeat-containing protein At5g18475... 0.02 Archaeplastida
LOC_Os01g57630.2 No alias Pentatricopeptide repeat-containing protein At1g55890,... 0.04 Archaeplastida
LOC_Os01g63400.1 No alias Pentatricopeptide repeat-containing protein At3g09060... 0.03 Archaeplastida
LOC_Os02g26890.1 No alias Pentatricopeptide repeat-containing protein At5g18475... 0.03 Archaeplastida
LOC_Os05g04160.1 No alias Pentatricopeptide repeat-containing protein At3g48810... 0.03 Archaeplastida
LOC_Os05g11700.1 No alias Putative pentatricopeptide repeat-containing protein... 0.02 Archaeplastida
LOC_Os08g39050.1 No alias Pentatricopeptide repeat-containing protein At1g80150,... 0.03 Archaeplastida
MA_125741g0010 No alias Pentatricopeptide repeat-containing protein At5g16420,... 0.02 Archaeplastida
MA_138370g0010 No alias Pentatricopeptide repeat-containing protein At1g80150,... 0.03 Archaeplastida
MA_525159g0010 No alias Pentatricopeptide repeat-containing protein At1g07740,... 0.03 Archaeplastida
MA_57592g0010 No alias Pentatricopeptide repeat-containing protein At3g09060... 0.03 Archaeplastida
MA_71816g0020 No alias Pentatricopeptide repeat-containing protein At3g14580,... 0.03 Archaeplastida
MA_742945g0010 No alias Pentatricopeptide repeat-containing protein At5g16420,... 0.03 Archaeplastida
MA_80720g0010 No alias Putative pentatricopeptide repeat-containing protein... 0.03 Archaeplastida
Smo78295 No alias No description available 0.04 Archaeplastida
Solyc02g077650.2.1 No alias Pentatricopeptide repeat-containing protein At5g46100... 0.05 Archaeplastida
Solyc02g079830.1.1 No alias Pentatricopeptide repeat-containing protein At3g13160,... 0.03 Archaeplastida
Solyc03g031460.1.1 No alias Pentatricopeptide repeat-containing protein At3g13160,... 0.02 Archaeplastida
Solyc04g076070.1.1 No alias Pentatricopeptide repeat-containing protein At5g18475... 0.04 Archaeplastida
Solyc05g012250.3.1 No alias Pentatricopeptide repeat-containing protein At1g80150,... 0.03 Archaeplastida
Solyc09g061760.1.1 No alias Pentatricopeptide repeat-containing protein At2g17525,... 0.03 Archaeplastida
Solyc12g014330.1.1 No alias Putative pentatricopeptide repeat-containing protein... 0.04 Archaeplastida
Solyc12g035170.3.1 No alias Putative pentatricopeptide repeat-containing protein... 0.04 Archaeplastida
Zm00001e003447_P001 No alias no hits & (original description: none) 0.04 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP Neighborhood
MF GO:0003682 chromatin binding IEP Neighborhood
MF GO:0003690 double-stranded DNA binding IEP Neighborhood
MF GO:0004386 helicase activity IEP Neighborhood
MF GO:0004527 exonuclease activity IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
CC GO:0005575 cellular_component IEP Neighborhood
CC GO:0005667 transcription factor complex IEP Neighborhood
CC GO:0005672 transcription factor TFIIA complex IEP Neighborhood
CC GO:0005956 protein kinase CK2 complex IEP Neighborhood
BP GO:0006352 DNA-templated transcription, initiation IEP Neighborhood
BP GO:0006367 transcription initiation from RNA polymerase II promoter IEP Neighborhood
BP GO:0006644 phospholipid metabolic process IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
MF GO:0008408 3'-5' exonuclease activity IEP Neighborhood
BP GO:0008654 phospholipid biosynthetic process IEP Neighborhood
CC GO:0016020 membrane IEP Neighborhood
MF GO:0016780 phosphotransferase activity, for other substituted phosphate groups IEP Neighborhood
MF GO:0019207 kinase regulator activity IEP Neighborhood
MF GO:0019887 protein kinase regulator activity IEP Neighborhood
CC GO:0030176 integral component of endoplasmic reticulum membrane IEP Neighborhood
CC GO:0031227 intrinsic component of endoplasmic reticulum membrane IEP Neighborhood
MF GO:0043167 ion binding IEP Neighborhood
MF GO:0043169 cation binding IEP Neighborhood
CC GO:0044422 organelle part IEP Neighborhood
CC GO:0044432 endoplasmic reticulum part IEP Neighborhood
CC GO:0044446 intracellular organelle part IEP Neighborhood
CC GO:0044451 nucleoplasm part IEP Neighborhood
CC GO:0044798 nuclear transcription factor complex IEP Neighborhood
MF GO:0046872 metal ion binding IEP Neighborhood
MF GO:0046914 transition metal ion binding IEP Neighborhood
CC GO:0090575 RNA polymerase II transcription factor complex IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 329 358
IPR002885 Pentatricopeptide_repeat 468 501
IPR002885 Pentatricopeptide_repeat 370 395
IPR002885 Pentatricopeptide_repeat 121 142
IPR002885 Pentatricopeptide_repeat 229 256
IPR002885 Pentatricopeptide_repeat 647 694
IPR002885 Pentatricopeptide_repeat 507 556
IPR002885 Pentatricopeptide_repeat 262 311
IPR002885 Pentatricopeptide_repeat 156 205
IPR002885 Pentatricopeptide_repeat 402 451
IPR002885 Pentatricopeptide_repeat 578 624
No external refs found!