Zm00001e028897_P002

Description : subunit 5 of RNA polymerase

Gene families : OG0003559 (Archaeplastida) Phylogenetic Tree(s): OG0003559_tree ,
OG_05_0003718 (LandPlants) Phylogenetic Tree(s): OG_05_0003718_tree ,
OG_06_0005015 (SeedPlants) Phylogenetic Tree(s): OG_06_0005015_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Zm00001e028897_P002
Cluster	HCCA: Cluster_296

Target	Alias	Description	ECC score	Gene Family Method	Actions
LOC_Os01g59140.1	No alias	subunit 5 of RNA polymerase	0.03	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0003899	DNA-directed 5'-3' RNA polymerase activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006351	transcription, DNA-templated	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	None	Extended
MF	GO:0016779	nucleotidyltransferase activity	None	Extended
BP	GO:0018130	heterocycle biosynthetic process	None	Extended
BP	GO:0019438	aromatic compound biosynthetic process	None	Extended
BP	GO:0032774	RNA biosynthetic process	None	Extended
CC	GO:0033643	host cell part	None	Extended
CC	GO:0033646	host intracellular part	None	Extended
CC	GO:0033647	host intracellular organelle	None	Extended
CC	GO:0033648	host intracellular membrane-bounded organelle	None	Extended
MF	GO:0034062	5'-3' RNA polymerase activity	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0034654	nucleobase-containing compound biosynthetic process	None	Extended
CC	GO:0042025	host cell nucleus	IEA	Interproscan
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0044217	other organism part	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:0097659	nucleic acid-templated transcription	None	Extended
MF	GO:0097747	RNA polymerase activity	None	Extended
MF	GO:0140098	catalytic activity, acting on RNA	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901362	organic cyclic compound biosynthetic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003993	acid phosphatase activity	IEP	Neighborhood
MF	GO:0004061	arylformamidase activity	IEP	Neighborhood
MF	GO:0004180	carboxypeptidase activity	IEP	Neighborhood
MF	GO:0004185	serine-type carboxypeptidase activity	IEP	Neighborhood
MF	GO:0005543	phospholipid binding	IEP	Neighborhood
MF	GO:0005544	calcium-dependent phospholipid binding	IEP	Neighborhood
BP	GO:0006568	tryptophan metabolic process	IEP	Neighborhood
BP	GO:0006569	tryptophan catabolic process	IEP	Neighborhood
BP	GO:0006576	cellular biogenic amine metabolic process	IEP	Neighborhood
BP	GO:0006586	indolalkylamine metabolic process	IEP	Neighborhood
BP	GO:0009063	cellular amino acid catabolic process	IEP	Neighborhood
BP	GO:0009072	aromatic amino acid family metabolic process	IEP	Neighborhood
BP	GO:0009074	aromatic amino acid family catabolic process	IEP	Neighborhood
BP	GO:0009308	amine metabolic process	IEP	Neighborhood
BP	GO:0009310	amine catabolic process	IEP	Neighborhood
BP	GO:0016054	organic acid catabolic process	IEP	Neighborhood
MF	GO:0016791	phosphatase activity	IEP	Neighborhood
MF	GO:0016810	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds	IEP	Neighborhood
MF	GO:0016811	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides	IEP	Neighborhood
BP	GO:0019441	tryptophan catabolic process to kynurenine	IEP	Neighborhood
BP	GO:0042180	cellular ketone metabolic process	IEP	Neighborhood
BP	GO:0042402	cellular biogenic amine catabolic process	IEP	Neighborhood
BP	GO:0042430	indole-containing compound metabolic process	IEP	Neighborhood
BP	GO:0042436	indole-containing compound catabolic process	IEP	Neighborhood
BP	GO:0042537	benzene-containing compound metabolic process	IEP	Neighborhood
MF	GO:0043169	cation binding	IEP	Neighborhood
BP	GO:0044106	cellular amine metabolic process	IEP	Neighborhood
BP	GO:0044282	small molecule catabolic process	IEP	Neighborhood
BP	GO:0046218	indolalkylamine catabolic process	IEP	Neighborhood
BP	GO:0046395	carboxylic acid catabolic process	IEP	Neighborhood
MF	GO:0046872	metal ion binding	IEP	Neighborhood
BP	GO:0070189	kynurenine metabolic process	IEP	Neighborhood
BP	GO:1901565	organonitrogen compound catabolic process	IEP	Neighborhood
BP	GO:1901606	alpha-amino acid catabolic process	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR005571	RNA_pol_Rpb5_N	11	94
IPR000783	RNA_pol_subH/Rpb5_C	137	169

External Links

No external refs found!

Zm00001e028897_P002

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation