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  5. Zm00001e029647_P001

Zm00001e029647_P001


Description : Putative pentatricopeptide repeat-containing protein At3g28640 OS=Arabidopsis thaliana (sp|q9ljj1|pp259_arath : 323.0)


Gene families : OG0013931 (Archaeplastida) Phylogenetic Tree(s): OG0013931_tree ,
OG_05_0000789 (LandPlants) Phylogenetic Tree(s): OG_05_0000789_tree ,
OG_06_0000692 (SeedPlants) Phylogenetic Tree(s): OG_06_0000692_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e029647_P001
Cluster HCCA: Cluster_11

Target Alias Description ECC score Gene Family Method Actions
LOC_Os03g52475.1 No alias Pentatricopeptide repeat-containing protein At3g28660... 0.03 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0006355 regulation of transcription, DNA-templated IEP Neighborhood
BP GO:0009889 regulation of biosynthetic process IEP Neighborhood
BP GO:0010468 regulation of gene expression IEP Neighborhood
BP GO:0010556 regulation of macromolecule biosynthetic process IEP Neighborhood
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0019222 regulation of metabolic process IEP Neighborhood
BP GO:0031323 regulation of cellular metabolic process IEP Neighborhood
BP GO:0031326 regulation of cellular biosynthetic process IEP Neighborhood
MF GO:0050660 flavin adenine dinucleotide binding IEP Neighborhood
BP GO:0051171 regulation of nitrogen compound metabolic process IEP Neighborhood
BP GO:0051252 regulation of RNA metabolic process IEP Neighborhood
BP GO:0060255 regulation of macromolecule metabolic process IEP Neighborhood
MF GO:0071949 FAD binding IEP Neighborhood
BP GO:0080090 regulation of primary metabolic process IEP Neighborhood
BP GO:1903506 regulation of nucleic acid-templated transcription IEP Neighborhood
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP Neighborhood
BP GO:2001141 regulation of RNA biosynthetic process IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 349 373
IPR002885 Pentatricopeptide_repeat 277 304
IPR002885 Pentatricopeptide_repeat 173 199
IPR002885 Pentatricopeptide_repeat 248 274
IPR002885 Pentatricopeptide_repeat 318 338
No external refs found!