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  5. AT1G02420

AT1G02420


Description : Pentatricopeptide repeat (PPR) superfamily protein


Gene families : OG0006800 (Archaeplastida) Phylogenetic Tree(s): OG0006800_tree ,
OG_05_0005102 (LandPlants) Phylogenetic Tree(s): OG_05_0005102_tree ,
OG_06_0010515 (SeedPlants) Phylogenetic Tree(s): OG_06_0010515_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT1G02420
Cluster HCCA: Cluster_232

Target Alias Description ECC score Gene Family Method Actions
AT3G61360 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.05 Archaeplastida
Cpa|evm.model.tig00000808.10 No alias No description available 0.01 Archaeplastida
Gb_05336 No alias Putative pentatricopeptide repeat-containing protein... 0.05 Archaeplastida
Gb_12874 No alias Pentatricopeptide repeat-containing protein At3g61360... 0.03 Archaeplastida
LOC_Os03g11020.1 No alias Putative pentatricopeptide repeat-containing protein... 0.05 Archaeplastida
Solyc11g071670.2.1 No alias Putative pentatricopeptide repeat-containing protein... 0.07 Archaeplastida
Zm00001e013118_P001 No alias Pentatricopeptide repeat-containing protein At3g61360... 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003674 molecular_function ND Interproscan
CC GO:0005739 mitochondrion ISM Interproscan
BP GO:0008150 biological_process ND Interproscan
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Type GO Term Name Evidence Source
CC GO:0005838 proteasome regulatory particle IEP Neighborhood
MF GO:0008131 primary amine oxidase activity IEP Neighborhood
BP GO:0009956 radial pattern formation IEP Neighborhood
BP GO:0010017 red or far-red light signaling pathway IEP Neighborhood
BP GO:0010018 far-red light signaling pathway IEP Neighborhood
BP GO:0010496 intercellular transport IEP Neighborhood
MF GO:0016638 oxidoreductase activity, acting on the CH-NH2 group of donors IEP Neighborhood
MF GO:0016641 oxidoreductase activity, acting on the CH-NH2 group of donors, oxygen as acceptor IEP Neighborhood
BP GO:0042753 positive regulation of circadian rhythm IEP Neighborhood
BP GO:0051568 histone H3-K4 methylation IEP Neighborhood
BP GO:0071490 cellular response to far red light IEP Neighborhood
BP GO:0090057 root radial pattern formation IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 244 291
IPR002885 Pentatricopeptide_repeat 314 360
IPR002885 Pentatricopeptide_repeat 392 417
IPR002885 Pentatricopeptide_repeat 224 242
IPR002885 Pentatricopeptide_repeat 426 451
No external refs found!