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  5. AT3G45540

AT3G45540


Description : RING/U-box protein with C6HC-type zinc finger


Gene families : OG0000316 (Archaeplastida) Phylogenetic Tree(s): OG0000316_tree ,
OG_05_0004760 (LandPlants) Phylogenetic Tree(s): OG_05_0004760_tree ,
OG_06_0003098 (SeedPlants) Phylogenetic Tree(s): OG_06_0003098_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT3G45540
Cluster HCCA: Cluster_74

Target Alias Description ECC score Gene Family Method Actions
AT2G16520 No alias FUNCTIONS IN: molecular_function unknown; INVOLVED IN:... 0.11 Archaeplastida
AT2G21420 No alias IBR domain containing protein 0.08 Archaeplastida
AT2G22940 No alias BEST Arabidopsis thaliana protein match is: zinc finger... 0.04 Archaeplastida
AT2G25360 No alias RING/U-box superfamily protein 0.06 Archaeplastida
AT2G25370 No alias RING/U-box superfamily protein 0.09 Archaeplastida
AT2G26135 No alias RING/U-box protein with C6HC-type zinc finger 0.03 Archaeplastida
AT3G45470 No alias IBR domain containing protein 0.11 Archaeplastida
AT3G45500 No alias BEST Arabidopsis thaliana protein match is: RING/U-box... 0.07 Archaeplastida
AT3G45580 No alias RING/U-box protein with C6HC-type zinc finger 0.07 Archaeplastida
AT3G53690 No alias RING/U-box superfamily protein 0.1 Archaeplastida
MA_64485g0010 No alias plant-specific E3 ubiquitin ligase (RSL/RFA) 0.03 Archaeplastida
Solyc01g110080.2.1 No alias plant-specific E3 ubiquitin ligase (RSL/RFA) 0.04 Archaeplastida
Solyc01g110090.1.1 No alias no hits & (original description: none) 0.03 Archaeplastida
Solyc01g110100.4.1 No alias plant-specific E3 ubiquitin ligase (RSL/RFA) 0.02 Archaeplastida
Solyc03g115920.3.1 No alias plant-specific E3 ubiquitin ligase (RSL/RFA) 0.03 Archaeplastida

Type GO Term Name Evidence Source
BP GO:0048446 petal morphogenesis RCA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004871 obsolete signal transducer activity IEP Neighborhood
MF GO:0005375 copper ion transmembrane transporter activity IEP Neighborhood
CC GO:0005634 nucleus IEP Neighborhood
CC GO:0005887 integral component of plasma membrane IEP Neighborhood
BP GO:0006857 oligopeptide transport IEP Neighborhood
BP GO:0009555 pollen development IEP Neighborhood
BP GO:0010208 pollen wall assembly IEP Neighborhood
BP GO:0010584 pollen exine formation IEP Neighborhood
BP GO:0010927 cellular component assembly involved in morphogenesis IEP Neighborhood
MF GO:0015089 high-affinity copper ion transmembrane transporter activity IEP Neighborhood
MF GO:0015095 magnesium ion transmembrane transporter activity IEP Neighborhood
MF GO:0015145 monosaccharide transmembrane transporter activity IEP Neighborhood
BP GO:0015749 monosaccharide transmembrane transport IEP Neighborhood
BP GO:0018126 protein hydroxylation IEP Neighborhood
BP GO:0018401 peptidyl-proline hydroxylation to 4-hydroxy-L-proline IEP Neighborhood
BP GO:0019471 4-hydroxyproline metabolic process IEP Neighborhood
BP GO:0019511 peptidyl-proline hydroxylation IEP Neighborhood
BP GO:0034219 carbohydrate transmembrane transport IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
BP GO:0048229 gametophyte development IEP Neighborhood
MF GO:0051119 sugar transmembrane transporter activity IEP Neighborhood
InterPro domains Description Start Stop
IPR002867 IBR_dom 255 296
IPR002867 IBR_dom 169 235
IPR018957 Znf_C3HC4_RING-type 100 145
No external refs found!