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  5. AT3G45580

AT3G45580


Description : RING/U-box protein with C6HC-type zinc finger


Gene families : OG0000316 (Archaeplastida) Phylogenetic Tree(s): OG0000316_tree ,
OG_05_0004760 (LandPlants) Phylogenetic Tree(s): OG_05_0004760_tree ,
OG_06_0003098 (SeedPlants) Phylogenetic Tree(s): OG_06_0003098_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT3G45580
Cluster HCCA: Cluster_73

Target Alias Description ECC score Gene Family Method Actions
AT2G16520 No alias FUNCTIONS IN: molecular_function unknown; INVOLVED IN:... 0.07 Archaeplastida
AT2G21420 No alias IBR domain containing protein 0.04 Archaeplastida
AT2G22940 No alias BEST Arabidopsis thaliana protein match is: zinc finger... 0.03 Archaeplastida
AT2G26135 No alias RING/U-box protein with C6HC-type zinc finger 0.03 Archaeplastida
AT3G45540 No alias RING/U-box protein with C6HC-type zinc finger 0.07 Archaeplastida
AT3G53690 No alias RING/U-box superfamily protein 0.04 Archaeplastida
Cpa|evm.model.tig00021035.20 No alias No description available 0.01 Archaeplastida

Type GO Term Name Evidence Source
CC GO:0005634 nucleus ISM Interproscan
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Type GO Term Name Evidence Source
BP GO:0002790 peptide secretion IEP Neighborhood
MF GO:0004044 amidophosphoribosyltransferase activity IEP Neighborhood
BP GO:0006144 purine nucleobase metabolic process IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
BP GO:0009112 nucleobase metabolic process IEP Neighborhood
BP GO:0009113 purine nucleobase biosynthetic process IEP Neighborhood
BP GO:0009306 protein secretion IEP Neighborhood
BP GO:0046112 nucleobase biosynthetic process IEP Neighborhood
MF GO:0046914 transition metal ion binding IEP Neighborhood
MF GO:0060089 molecular transducer activity IEP Neighborhood
InterPro domains Description Start Stop
IPR002867 IBR_dom 323 369
IPR002867 IBR_dom 247 308
IPR002156 RNaseH_domain 43 155
No external refs found!