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  5. Zm00001e030477_P001

Zm00001e030477_P001


Description : ubiquitin ligase component Doa10 of ER-associated protein degradation (ERAD) machinery


Gene families : OG0004449 (Archaeplastida) Phylogenetic Tree(s): OG0004449_tree ,
OG_05_0004635 (LandPlants) Phylogenetic Tree(s): OG_05_0004635_tree ,
OG_06_0005839 (SeedPlants) Phylogenetic Tree(s): OG_06_0005839_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e030477_P001
Cluster HCCA: Cluster_79

Target Alias Description ECC score Gene Family Method Actions
AT4G34100 No alias RING/U-box superfamily protein 0.03 Archaeplastida
GSVIVT01031710001 No alias Protein degradation.ER-associated protein degradation... 0.04 Archaeplastida
Gb_37944 No alias ubiquitin ligase component Doa10 of ER-associated... 0.04 Archaeplastida
LOC_Os06g43210.1 No alias ubiquitin ligase component Doa10 of ER-associated... 0.06 Archaeplastida
MA_15237g0010 No alias ubiquitin ligase component Doa10 of ER-associated... 0.02 Archaeplastida
Pp3c9_10370V3.1 No alias RING/U-box superfamily protein 0.02 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
MF GO:0019899 enzyme binding IEP Neighborhood
MF GO:0031625 ubiquitin protein ligase binding IEP Neighborhood
CC GO:0033643 host cell part IEP Neighborhood
CC GO:0033646 host intracellular part IEP Neighborhood
CC GO:0033647 host intracellular organelle IEP Neighborhood
CC GO:0033648 host intracellular membrane-bounded organelle IEP Neighborhood
CC GO:0042025 host cell nucleus IEP Neighborhood
CC GO:0044217 other organism part IEP Neighborhood
MF GO:0044389 ubiquitin-like protein ligase binding IEP Neighborhood
MF GO:0061630 ubiquitin protein ligase activity IEP Neighborhood
MF GO:0061659 ubiquitin-like protein ligase activity IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
InterPro domains Description Start Stop
IPR011016 Znf_RING-CH 35 81
No external refs found!