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Description : Histone superfamily protein
Gene families : OG0000170 (Archaeplastida) Phylogenetic Tree(s): OG0000170_tree ,
OG_05_0000135 (LandPlants) Phylogenetic Tree(s): OG_05_0000135_tree ,
OG_06_0000106 (SeedPlants) Phylogenetic Tree(s): OG_06_0000106_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: AT3G45930 | |
| Cluster | HCCA: Cluster_110 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AMTR_s00001p00271490 | evm_27.TU.AmTr_v1... | Chromatin organisation.histones.H4-type histone | 0.03 | Archaeplastida | |
| AMTR_s00003p00201000 | evm_27.TU.AmTr_v1... | Chromatin organisation.histones.H4-type histone | 0.05 | Archaeplastida | |
| AMTR_s00003p00256370 | evm_27.TU.AmTr_v1... | Chromatin organisation.histones.H4-type histone | 0.03 | Archaeplastida | |
| AMTR_s00019p00220160 | evm_27.TU.AmTr_v1... | Chromatin organisation.histones.H4-type histone | 0.03 | Archaeplastida | |
| Cre06.g264600 | No alias | Chromatin organisation.histones.H4-type histone | 0.09 | Archaeplastida | |
| Cre06.g265050 | No alias | Chromatin organisation.histones.H4-type histone | 0.09 | Archaeplastida | |
| Cre06.g265200 | No alias | Chromatin organisation.histones.H4-type histone | 0.09 | Archaeplastida | |
| Cre06.g265450 | No alias | Chromatin organisation.histones.H4-type histone | 0.09 | Archaeplastida | |
| Cre06.g266600 | No alias | Chromatin organisation.histones.H4-type histone | 0.09 | Archaeplastida | |
| Cre06.g268000 | No alias | Chromatin organisation.histones.H4-type histone | 0.09 | Archaeplastida | |
| Cre06.g268400 | No alias | Chromatin organisation.histones.H4-type histone | 0.08 | Archaeplastida | |
| Cre06.g271300 | No alias | Chromatin organisation.histones.H4-type histone | 0.09 | Archaeplastida | |
| Cre06.g274150 | No alias | Chromatin organisation.histones.H4-type histone | 0.09 | Archaeplastida | |
| Cre06.g274300 | No alias | Chromatin organisation.histones.H4-type histone | 0.09 | Archaeplastida | |
| Cre06.g274900 | No alias | Chromatin organisation.histones.H4-type histone | 0.09 | Archaeplastida | |
| Cre06.g275700 | No alias | Chromatin organisation.histones.H4-type histone | 0.09 | Archaeplastida | |
| Cre06.g276650 | No alias | Chromatin organisation.histones.H4-type histone | 0.09 | Archaeplastida | |
| Cre06.g276800 | No alias | Chromatin organisation.histones.H4-type histone | 0.08 | Archaeplastida | |
| Cre12.g504600 | No alias | Chromatin organisation.histones.H4-type histone | 0.09 | Archaeplastida | |
| Cre12.g504850 | No alias | Chromatin organisation.histones.H4-type histone | 0.1 | Archaeplastida | |
| Cre12.g505450 | No alias | Chromatin organisation.histones.H4-type histone | 0.09 | Archaeplastida | |
| Cre12.g506350 | No alias | Chromatin organisation.histones.H4-type histone | 0.09 | Archaeplastida | |
| Cre12.g506450 | No alias | Chromatin organisation.histones.H4-type histone | 0.09 | Archaeplastida | |
| Cre17.g708650 | No alias | Chromatin organisation.histones.H4-type histone | 0.09 | Archaeplastida | |
| Cre17.g709100 | No alias | Chromatin organisation.histones.H4-type histone | 0.08 | Archaeplastida | |
| GSVIVT01016577001 | No alias | Chromatin organisation.histones.H4-type histone | 0.09 | Archaeplastida | |
| GSVIVT01016578001 | No alias | Chromatin organisation.histones.H4-type histone | 0.05 | Archaeplastida | |
| GSVIVT01025005001 | No alias | Chromatin organisation.histones.H4-type histone | 0.09 | Archaeplastida | |
| GSVIVT01032631001 | No alias | Chromatin organisation.histones.H4-type histone | 0.07 | Archaeplastida | |
| GSVIVT01034208001 | No alias | Chromatin organisation.histones.H4-type histone | 0.03 | Archaeplastida | |
| Gb_10373 | No alias | histone (H4) | 0.18 | Archaeplastida | |
| Gb_10374 | No alias | histone (H4) | 0.07 | Archaeplastida | |
| Gb_15454 | No alias | histone (H4) | 0.05 | Archaeplastida | |
| Gb_15455 | No alias | histone (H4) | 0.04 | Archaeplastida | |
| Gb_15458 | No alias | histone (H4) | 0.15 | Archaeplastida | |
| Gb_15459 | No alias | histone (H4) | 0.03 | Archaeplastida | |
| Gb_20453 | No alias | histone (H4) | 0.06 | Archaeplastida | |
| Gb_21914 | No alias | histone (H4) | 0.15 | Archaeplastida | |
| Gb_21918 | No alias | histone (H4) | 0.1 | Archaeplastida | |
| Gb_25031 | No alias | histone (H4) | 0.05 | Archaeplastida | |
| Gb_28215 | No alias | histone (H4) | 0.03 | Archaeplastida | |
| LOC_Os01g61920.1 | No alias | histone (H4) | 0.07 | Archaeplastida | |
| LOC_Os02g45940.1 | No alias | histone (H4) | 0.08 | Archaeplastida | |
| LOC_Os03g02780.1 | No alias | histone (H4) | 0.08 | Archaeplastida | |
| LOC_Os04g49420.1 | No alias | histone (H4) | 0.03 | Archaeplastida | |
| LOC_Os05g38740.1 | No alias | histone (H4) | 0.03 | Archaeplastida | |
| LOC_Os05g39050.1 | No alias | histone (H4) | 0.07 | Archaeplastida | |
| LOC_Os07g36500.1 | No alias | histone (H4) | 0.06 | Archaeplastida | |
| LOC_Os09g26340.1 | No alias | histone (H4) | 0.08 | Archaeplastida | |
| LOC_Os09g38020.1 | No alias | histone (H4) | 0.14 | Archaeplastida | |
| LOC_Os10g39410.1 | No alias | histone (H4) | 0.03 | Archaeplastida | |
| MA_10427181g0010 | No alias | histone (H4) | 0.05 | Archaeplastida | |
| MA_10433778g0010 | No alias | histone (H4) | 0.07 | Archaeplastida | |
| MA_116904g0010 | No alias | histone (H4) | 0.08 | Archaeplastida | |
| MA_141877g0030 | No alias | histone (H4) | 0.05 | Archaeplastida | |
| MA_234535g0010 | No alias | histone (H4) | 0.04 | Archaeplastida | |
| MA_28618g0010 | No alias | histone (H4) | 0.03 | Archaeplastida | |
| MA_38882g0010 | No alias | histone (H4) | 0.02 | Archaeplastida | |
| MA_465285g0010 | No alias | histone (H4) | 0.08 | Archaeplastida | |
| MA_713159g0010 | No alias | histone (H4) | 0.1 | Archaeplastida | |
| MA_73436g0010 | No alias | histone (H4) | 0.03 | Archaeplastida | |
| MA_74102g0010 | No alias | histone (H4) | 0.08 | Archaeplastida | |
| MA_83574g0010 | No alias | histone (H4) | 0.03 | Archaeplastida | |
| MA_89764g0010 | No alias | histone (H4) | 0.05 | Archaeplastida | |
| MA_9266178g0010 | No alias | no hits & (original description: none) | 0.07 | Archaeplastida | |
| MA_97951g0010 | No alias | histone (H4) | 0.03 | Archaeplastida | |
| Mp4g03080.1 | No alias | histone (H4) | 0.03 | Archaeplastida | |
| Mp4g03090.1 | No alias | histone (H4) | 0.06 | Archaeplastida | |
| Mp4g13430.1 | No alias | histone (H4) | 0.06 | Archaeplastida | |
| Mp4g13440.1 | No alias | histone (H4) | 0.04 | Archaeplastida | |
| Mp5g16840.1 | No alias | histone (H4) | 0.05 | Archaeplastida | |
| Mp5g22460.1 | No alias | histone (H4) | 0.07 | Archaeplastida | |
| Mp5g22470.1 | No alias | histone (H4) | 0.07 | Archaeplastida | |
| Pp3c13_5310V3.1 | No alias | Histone superfamily protein | 0.03 | Archaeplastida | |
| Pp3c22_22340V3.1 | No alias | histone H4 | 0.07 | Archaeplastida | |
| Pp3c4_22160V3.1 | No alias | Histone superfamily protein | 0.06 | Archaeplastida | |
| Pp3c7_22150V3.1 | No alias | histone H4 | 0.03 | Archaeplastida | |
| Smo150847 | No alias | Chromatin organisation.histones.H4-type histone | 0.03 | Archaeplastida | |
| Smo167497 | No alias | Chromatin organisation.histones.H4-type histone | 0.04 | Archaeplastida | |
| Smo233579 | No alias | Chromatin organisation.histones.H4-type histone | 0.06 | Archaeplastida | |
| Solyc04g011390.1.1 | No alias | histone (H4) | 0.17 | Archaeplastida | |
| Solyc05g054610.1.1 | No alias | histone (H4) | 0.19 | Archaeplastida | |
| Solyc06g005420.1.1 | No alias | histone (H4) | 0.22 | Archaeplastida | |
| Solyc06g005430.1.1 | No alias | histone (H4) | 0.16 | Archaeplastida | |
| Solyc06g072240.1.1 | No alias | histone (H4) | 0.21 | Archaeplastida | |
| Solyc06g075830.2.1 | No alias | histone (H4) | 0.24 | Archaeplastida | |
| Solyc06g075850.1.1 | No alias | histone (H4) | 0.08 | Archaeplastida | |
| Solyc06g075930.1.1 | No alias | histone (H4) | 0.08 | Archaeplastida | |
| Solyc06g075960.1.1 | No alias | histone (H4) | 0.13 | Archaeplastida | |
| Solyc11g066160.1.1 | No alias | histone (H4) | 0.23 | Archaeplastida | |
| Solyc11g072840.1.1 | No alias | histone (H4) | 0.17 | Archaeplastida | |
| Solyc11g072860.2.1 | No alias | histone (H4) | 0.16 | Archaeplastida | |
| Zm00001e007138_P001 | No alias | histone (H4) | 0.07 | Archaeplastida | |
| Zm00001e009859_P001 | No alias | histone (H4) | 0.1 | Archaeplastida | |
| Zm00001e016816_P001 | No alias | histone (H4) | 0.08 | Archaeplastida | |
| Zm00001e019368_P001 | No alias | histone (H4) | 0.06 | Archaeplastida | |
| Zm00001e023245_P001 | No alias | histone (H4) | 0.1 | Archaeplastida | |
| Zm00001e025845_P001 | No alias | histone (H4) | 0.07 | Archaeplastida | |
| Zm00001e027269_P001 | No alias | histone (H4) | 0.06 | Archaeplastida | |
| Zm00001e034229_P001 | No alias | histone (H4) | 0.09 | Archaeplastida | |
| Zm00001e034230_P001 | No alias | histone (H4) | 0.1 | Archaeplastida | |
| Zm00001e034964_P001 | No alias | histone (H4) | 0.12 | Archaeplastida |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003677 | DNA binding | ISS | Interproscan |
| CC | GO:0005634 | nucleus | ISM | Interproscan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0000287 | magnesium ion binding | IEP | Neighborhood |
| BP | GO:0000447 | endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | IEP | Neighborhood |
| BP | GO:0000461 | endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | IEP | Neighborhood |
| BP | GO:0000469 | cleavage involved in rRNA processing | IEP | Neighborhood |
| BP | GO:0000478 | endonucleolytic cleavage involved in rRNA processing | IEP | Neighborhood |
| BP | GO:0000479 | endonucleolytic cleavage of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | IEP | Neighborhood |
| BP | GO:0000724 | double-strand break repair via homologous recombination | IEP | Neighborhood |
| BP | GO:0000725 | recombinational repair | IEP | Neighborhood |
| CC | GO:0000785 | chromatin | IEP | Neighborhood |
| CC | GO:0000786 | nucleosome | IEP | Neighborhood |
| CC | GO:0000790 | nuclear chromatin | IEP | Neighborhood |
| BP | GO:0001708 | cell fate specification | IEP | Neighborhood |
| MF | GO:0004170 | dUTP diphosphatase activity | IEP | Neighborhood |
| CC | GO:0005730 | nucleolus | IEP | Neighborhood |
| CC | GO:0005732 | small nucleolar ribonucleoprotein complex | IEP | Neighborhood |
| BP | GO:0006139 | nucleobase-containing compound metabolic process | IEP | Neighborhood |
| BP | GO:0006259 | DNA metabolic process | IEP | Neighborhood |
| BP | GO:0006260 | DNA replication | IEP | Neighborhood |
| BP | GO:0006261 | DNA-dependent DNA replication | IEP | Neighborhood |
| BP | GO:0006275 | regulation of DNA replication | IEP | Neighborhood |
| BP | GO:0006279 | premeiotic DNA replication | IEP | Neighborhood |
| BP | GO:0006281 | DNA repair | IEP | Neighborhood |
| BP | GO:0006302 | double-strand break repair | IEP | Neighborhood |
| BP | GO:0006304 | DNA modification | IEP | Neighborhood |
| BP | GO:0006305 | DNA alkylation | IEP | Neighborhood |
| BP | GO:0006306 | DNA methylation | IEP | Neighborhood |
| BP | GO:0006325 | chromatin organization | IEP | Neighborhood |
| BP | GO:0006333 | chromatin assembly or disassembly | IEP | Neighborhood |
| BP | GO:0006334 | nucleosome assembly | IEP | Neighborhood |
| BP | GO:0006338 | chromatin remodeling | IEP | Neighborhood |
| BP | GO:0006479 | protein methylation | IEP | Neighborhood |
| BP | GO:0006725 | cellular aromatic compound metabolic process | IEP | Neighborhood |
| BP | GO:0006974 | cellular response to DNA damage stimulus | IEP | Neighborhood |
| BP | GO:0008213 | protein alkylation | IEP | Neighborhood |
| BP | GO:0008283 | cell proliferation | IEP | Neighborhood |
| BP | GO:0009059 | macromolecule biosynthetic process | IEP | Neighborhood |
| BP | GO:0009262 | deoxyribonucleotide metabolic process | IEP | Neighborhood |
| BP | GO:0009394 | 2'-deoxyribonucleotide metabolic process | IEP | Neighborhood |
| CC | GO:0009534 | chloroplast thylakoid | IEP | Neighborhood |
| CC | GO:0009579 | thylakoid | IEP | Neighborhood |
| BP | GO:0009582 | detection of abiotic stimulus | IEP | Neighborhood |
| BP | GO:0010091 | trichome branching | IEP | Neighborhood |
| BP | GO:0010224 | response to UV-B | IEP | Neighborhood |
| BP | GO:0016043 | cellular component organization | IEP | Neighborhood |
| BP | GO:0016048 | detection of temperature stimulus | IEP | Neighborhood |
| BP | GO:0016444 | somatic cell DNA recombination | IEP | Neighborhood |
| MF | GO:0016538 | cyclin-dependent protein serine/threonine kinase regulator activity | IEP | Neighborhood |
| BP | GO:0016569 | covalent chromatin modification | IEP | Neighborhood |
| BP | GO:0016570 | histone modification | IEP | Neighborhood |
| BP | GO:0016571 | histone methylation | IEP | Neighborhood |
| BP | GO:0016925 | protein sumoylation | IEP | Neighborhood |
| BP | GO:0018022 | peptidyl-lysine methylation | IEP | Neighborhood |
| BP | GO:0018193 | peptidyl-amino acid modification | IEP | Neighborhood |
| BP | GO:0018205 | peptidyl-lysine modification | IEP | Neighborhood |
| BP | GO:0019692 | deoxyribose phosphate metabolic process | IEP | Neighborhood |
| MF | GO:0030234 | enzyme regulator activity | IEP | Neighborhood |
| MF | GO:0030337 | DNA polymerase processivity factor activity | IEP | Neighborhood |
| MF | GO:0030527 | structural constituent of chromatin | IEP | Neighborhood |
| BP | GO:0031123 | RNA 3'-end processing | IEP | Neighborhood |
| BP | GO:0031125 | rRNA 3'-end processing | IEP | Neighborhood |
| CC | GO:0031976 | plastid thylakoid | IEP | Neighborhood |
| BP | GO:0032259 | methylation | IEP | Neighborhood |
| CC | GO:0032993 | protein-DNA complex | IEP | Neighborhood |
| BP | GO:0033260 | nuclear DNA replication | IEP | Neighborhood |
| BP | GO:0034641 | cellular nitrogen compound metabolic process | IEP | Neighborhood |
| BP | GO:0034645 | cellular macromolecule biosynthetic process | IEP | Neighborhood |
| BP | GO:0034728 | nucleosome organization | IEP | Neighborhood |
| BP | GO:0034968 | histone lysine methylation | IEP | Neighborhood |
| BP | GO:0042274 | ribosomal small subunit biogenesis | IEP | Neighborhood |
| CC | GO:0043228 | non-membrane-bounded organelle | IEP | Neighborhood |
| CC | GO:0043232 | intracellular non-membrane-bounded organelle | IEP | Neighborhood |
| BP | GO:0043414 | macromolecule methylation | IEP | Neighborhood |
| BP | GO:0043628 | ncRNA 3'-end processing | IEP | Neighborhood |
| BP | GO:0044030 | regulation of DNA methylation | IEP | Neighborhood |
| BP | GO:0044260 | cellular macromolecule metabolic process | IEP | Neighborhood |
| CC | GO:0044422 | organelle part | IEP | Neighborhood |
| CC | GO:0044427 | chromosomal part | IEP | Neighborhood |
| CC | GO:0044428 | nuclear part | IEP | Neighborhood |
| CC | GO:0044446 | intracellular organelle part | IEP | Neighborhood |
| BP | GO:0044728 | DNA methylation or demethylation | IEP | Neighborhood |
| BP | GO:0044786 | cell cycle DNA replication | IEP | Neighborhood |
| CC | GO:0044815 | DNA packaging complex | IEP | Neighborhood |
| BP | GO:0046483 | heterocycle metabolic process | IEP | Neighborhood |
| MF | GO:0047429 | nucleoside-triphosphate diphosphatase activity | IEP | Neighborhood |
| BP | GO:0051052 | regulation of DNA metabolic process | IEP | Neighborhood |
| BP | GO:0051567 | histone H3-K9 methylation | IEP | Neighborhood |
| BP | GO:0051726 | regulation of cell cycle | IEP | Neighborhood |
| BP | GO:0061647 | histone H3-K9 modification | IEP | Neighborhood |
| BP | GO:0065004 | protein-DNA complex assembly | IEP | Neighborhood |
| BP | GO:0071824 | protein-DNA complex subunit organization | IEP | Neighborhood |
| BP | GO:0071840 | cellular component organization or biogenesis | IEP | Neighborhood |
| BP | GO:0090304 | nucleic acid metabolic process | IEP | Neighborhood |
| BP | GO:0090501 | RNA phosphodiester bond hydrolysis | IEP | Neighborhood |
| BP | GO:0090502 | RNA phosphodiester bond hydrolysis, endonucleolytic | IEP | Neighborhood |
| BP | GO:1901360 | organic cyclic compound metabolic process | IEP | Neighborhood |
| CC | GO:1990904 | ribonucleoprotein complex | IEP | Neighborhood |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR035425 | CENP-T/H4_C | 36 | 96 |
| No external refs found! |