Zm00001e030532_P001

Description : Exopolygalacturonase OS=Zea mays (sp|p35338|pglr2_maize : 345.0)

Gene families : OG0000535 (Archaeplastida) Phylogenetic Tree(s): OG0000535_tree ,
OG_05_0000281 (LandPlants) Phylogenetic Tree(s): OG_05_0000281_tree ,
OG_06_0000124 (SeedPlants) Phylogenetic Tree(s): OG_06_0000124_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Zm00001e030532_P001
Cluster	HCCA: Cluster_165

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00002p00270640	evm_27.TU.AmTr_v1...	Enzyme classification.EC_3 hydrolases.EC_3.2 glycosylase	0.05	Archaeplastida
AT1G02790	PGA4	polygalacturonase 4	0.03	Archaeplastida
AT3G07830	No alias	Pectin lyase-like superfamily protein	0.04	Archaeplastida
AT3G07840	No alias	Pectin lyase-like superfamily protein	0.04	Archaeplastida
AT3G14040	No alias	Pectin lyase-like superfamily protein	0.03	Archaeplastida
GSVIVT01020794001	No alias	Polygalacturonase OS=Nicotiana tabacum	0.02	Archaeplastida
GSVIVT01028044001	No alias	Exopolygalacturonase clone GBGE184 OS=Arabidopsis thaliana	0.04	Archaeplastida
GSVIVT01030017001	No alias	Polygalacturonase OS=Gossypium hirsutum	0.03	Archaeplastida
GSVIVT01030023001	No alias	Polygalacturonase OS=Gossypium hirsutum	0.04	Archaeplastida
GSVIVT01030030001	No alias	Polygalacturonase OS=Gossypium hirsutum	0.02	Archaeplastida
GSVIVT01035103001	No alias	Exopolygalacturonase (Fragment) OS=Platanus acerifolia	0.06	Archaeplastida
LOC_Os01g33300.1	No alias	Exopolygalacturonase OS=Zea mays (sp\|p35339\|pglr3_maize...	0.06	Archaeplastida
LOC_Os02g10300.1	No alias	Exopolygalacturonase OS=Zea mays (sp\|p35339\|pglr3_maize...	0.12	Archaeplastida
LOC_Os06g35320.1	No alias	Exopolygalacturonase OS=Zea mays (sp\|p35339\|pglr3_maize...	0.11	Archaeplastida
LOC_Os06g40880.1	No alias	Probable galacturan 1,4-alpha-galacturonidase SALK6...	0.03	Archaeplastida
LOC_Os08g23790.1	No alias	Exopolygalacturonase (Fragment) OS=Platanus acerifolia...	0.05	Archaeplastida
Solyc01g066070.3.1	No alias	Exopolygalacturonase (Fragment) OS=Platanus acerifolia...	0.03	Archaeplastida
Solyc06g009200.3.1	No alias	Polygalacturonase OS=Nicotiana tabacum...	0.03	Archaeplastida
Solyc07g044870.4.1	No alias	Polygalacturonase OS=Nicotiana tabacum...	0.07	Archaeplastida
Zm00001e014069_P001	No alias	Exopolygalacturonase OS=Zea mays (sp\|p35339\|pglr3_maize...	0.04	Archaeplastida
Zm00001e014072_P001	No alias	Exopolygalacturonase OS=Zea mays (sp\|p35339\|pglr3_maize...	0.04	Archaeplastida
Zm00001e017747_P001	No alias	Exopolygalacturonase OS=Zea mays (sp\|p35339\|pglr3_maize...	0.03	Archaeplastida
Zm00001e025021_P003	No alias	Exopolygalacturonase OS=Zea mays (sp\|p35339\|pglr3_maize...	0.03	Archaeplastida
Zm00001e026354_P001	No alias	Exopolygalacturonase OS=Zea mays (sp\|p35339\|pglr3_maize...	0.05	Archaeplastida
Zm00001e030524_P001	No alias	Exopolygalacturonase OS=Zea mays (sp\|p35339\|pglr3_maize...	0.08	Archaeplastida
Zm00001e030526_P001	No alias	Exopolygalacturonase (Fragment) OS=Platanus acerifolia...	0.04	Archaeplastida
Zm00001e030529_P001	No alias	Exopolygalacturonase OS=Zea mays (sp\|p35338\|pglr2_maize...	0.06	Archaeplastida
Zm00001e030530_P001	No alias	Exopolygalacturonase OS=Zea mays (sp\|p26216\|pglr1_maize...	0.06	Archaeplastida
Zm00001e030533_P001	No alias	Exopolygalacturonase OS=Zea mays (sp\|p26216\|pglr1_maize...	0.06	Archaeplastida
Zm00001e042494_P001	No alias	Exopolygalacturonase OS=Zea mays (sp\|p26216\|pglr1_maize...	0.06	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004553	hydrolase activity, hydrolyzing O-glycosyl compounds	None	Extended
MF	GO:0004650	polygalacturonase activity	IEA	Interproscan
BP	GO:0005975	carbohydrate metabolic process	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016798	hydrolase activity, acting on glycosyl bonds	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003779	actin binding	IEP	Neighborhood
MF	GO:0004512	inositol-3-phosphate synthase activity	IEP	Neighborhood
MF	GO:0004857	enzyme inhibitor activity	IEP	Neighborhood
MF	GO:0005215	transporter activity	IEP	Neighborhood
MF	GO:0005216	ion channel activity	IEP	Neighborhood
MF	GO:0005244	voltage-gated ion channel activity	IEP	Neighborhood
MF	GO:0005247	voltage-gated chloride channel activity	IEP	Neighborhood
MF	GO:0005253	anion channel activity	IEP	Neighborhood
MF	GO:0005254	chloride channel activity	IEP	Neighborhood
MF	GO:0005515	protein binding	IEP	Neighborhood
MF	GO:0005516	calmodulin binding	IEP	Neighborhood
CC	GO:0005575	cellular_component	IEP	Neighborhood
BP	GO:0006020	inositol metabolic process	IEP	Neighborhood
BP	GO:0006021	inositol biosynthetic process	IEP	Neighborhood
BP	GO:0006066	alcohol metabolic process	IEP	Neighborhood
BP	GO:0006810	transport	IEP	Neighborhood
BP	GO:0006811	ion transport	IEP	Neighborhood
BP	GO:0006812	cation transport	IEP	Neighborhood
BP	GO:0006821	chloride transport	IEP	Neighborhood
BP	GO:0006996	organelle organization	IEP	Neighborhood
BP	GO:0007010	cytoskeleton organization	IEP	Neighborhood
MF	GO:0008092	cytoskeletal protein binding	IEP	Neighborhood
MF	GO:0008168	methyltransferase activity	IEP	Neighborhood
MF	GO:0008308	voltage-gated anion channel activity	IEP	Neighborhood
MF	GO:0008324	cation transmembrane transporter activity	IEP	Neighborhood
MF	GO:0015075	ion transmembrane transporter activity	IEP	Neighborhood
MF	GO:0015077	monovalent inorganic cation transmembrane transporter activity	IEP	Neighborhood
MF	GO:0015078	proton transmembrane transporter activity	IEP	Neighborhood
MF	GO:0015108	chloride transmembrane transporter activity	IEP	Neighborhood
MF	GO:0015267	channel activity	IEP	Neighborhood
MF	GO:0015291	secondary active transmembrane transporter activity	IEP	Neighborhood
MF	GO:0015297	antiporter activity	IEP	Neighborhood
MF	GO:0015298	solute:cation antiporter activity	IEP	Neighborhood
MF	GO:0015299	solute:proton antiporter activity	IEP	Neighborhood
MF	GO:0015318	inorganic molecular entity transmembrane transporter activity	IEP	Neighborhood
CC	GO:0016020	membrane	IEP	Neighborhood
CC	GO:0016021	integral component of membrane	IEP	Neighborhood
BP	GO:0016043	cellular component organization	IEP	Neighborhood
BP	GO:0016051	carbohydrate biosynthetic process	IEP	Neighborhood
CC	GO:0016459	myosin complex	IEP	Neighborhood
MF	GO:0016741	transferase activity, transferring one-carbon groups	IEP	Neighborhood
MF	GO:0016872	intramolecular lyase activity	IEP	Neighborhood
BP	GO:0019751	polyol metabolic process	IEP	Neighborhood
MF	GO:0022803	passive transmembrane transporter activity	IEP	Neighborhood
MF	GO:0022804	active transmembrane transporter activity	IEP	Neighborhood
MF	GO:0022832	voltage-gated channel activity	IEP	Neighborhood
MF	GO:0022838	substrate-specific channel activity	IEP	Neighborhood
MF	GO:0022857	transmembrane transporter activity	IEP	Neighborhood
MF	GO:0022890	inorganic cation transmembrane transporter activity	IEP	Neighborhood
MF	GO:0030234	enzyme regulator activity	IEP	Neighborhood
MF	GO:0030599	pectinesterase activity	IEP	Neighborhood
CC	GO:0031224	intrinsic component of membrane	IEP	Neighborhood
BP	GO:0034637	cellular carbohydrate biosynthetic process	IEP	Neighborhood
BP	GO:0042545	cell wall modification	IEP	Neighborhood
BP	GO:0044262	cellular carbohydrate metabolic process	IEP	Neighborhood
CC	GO:0044425	membrane part	IEP	Neighborhood
BP	GO:0045229	external encapsulating structure organization	IEP	Neighborhood
BP	GO:0046165	alcohol biosynthetic process	IEP	Neighborhood
BP	GO:0046173	polyol biosynthetic process	IEP	Neighborhood
MF	GO:0050664	oxidoreductase activity, acting on NAD(P)H, oxygen as acceptor	IEP	Neighborhood
BP	GO:0051179	localization	IEP	Neighborhood
BP	GO:0051234	establishment of localization	IEP	Neighborhood
MF	GO:0052689	carboxylic ester hydrolase activity	IEP	Neighborhood
BP	GO:0055085	transmembrane transport	IEP	Neighborhood
BP	GO:0071554	cell wall organization or biogenesis	IEP	Neighborhood
BP	GO:0071555	cell wall organization	IEP	Neighborhood
BP	GO:0071840	cellular component organization or biogenesis	IEP	Neighborhood
MF	GO:0098772	molecular function regulator	IEP	Neighborhood
BP	GO:1901615	organic hydroxy compound metabolic process	IEP	Neighborhood
BP	GO:1901617	organic hydroxy compound biosynthetic process	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR000743	Glyco_hydro_28	68	185

External Links

No external refs found!

Zm00001e030532_P001

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation