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  5. Zm00001e030606_P001

Zm00001e030606_P001


Description : RIS-Complex miRNA recruiting factor (AGO1)


Gene families : OG0000124 (Archaeplastida) Phylogenetic Tree(s): OG0000124_tree ,
OG_05_0000677 (LandPlants) Phylogenetic Tree(s): OG_05_0000677_tree ,
OG_06_0000508 (SeedPlants) Phylogenetic Tree(s): OG_06_0000508_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e030606_P001
Cluster HCCA: Cluster_68

Target Alias Description ECC score Gene Family Method Actions
ChrSy.fgenesh.mRNA.6 No alias no hits & (original description: none) 0.03 Archaeplastida
GSVIVT01031430001 No alias Chromatin organisation.DNA methylation.canonical... 0.03 Archaeplastida
LOC_Os03g58600.1 No alias Protein argonaute MEL1 OS=Oryza sativa subsp. japonica... 0.06 Archaeplastida
LOC_Os06g51310.2 No alias RIS-Complex miRNA recruiting factor (AGO1) 0.03 Archaeplastida
MA_161177g0010 No alias Protein argonaute 7 OS=Oryza sativa subsp. japonica... 0.06 Archaeplastida
MA_594g0010 No alias Protein argonaute PNH1 OS=Oryza sativa subsp. japonica... 0.02 Archaeplastida
Zm00001e002044_P002 No alias no hits & (original description: none) 0.03 Archaeplastida
Zm00001e007233_P001 No alias RIS-Complex miRNA recruiting factor (AGO1) 0.07 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0006396 RNA processing IEP Neighborhood
BP GO:0006397 mRNA processing IEP Neighborhood
BP GO:0007275 multicellular organism development IEP Neighborhood
BP GO:0009719 response to endogenous stimulus IEP Neighborhood
BP GO:0009725 response to hormone IEP Neighborhood
BP GO:0010033 response to organic substance IEP Neighborhood
BP GO:0016071 mRNA metabolic process IEP Neighborhood
BP GO:0032501 multicellular organismal process IEP Neighborhood
BP GO:0032502 developmental process IEP Neighborhood
BP GO:0042221 response to chemical IEP Neighborhood
BP GO:0048856 anatomical structure development IEP Neighborhood
InterPro domains Description Start Stop
IPR014811 ArgoL1 268 317
IPR032473 Argonaute_Mid_dom 517 594
IPR003165 Piwi 609 928
IPR032472 ArgoL2 462 506
IPR003100 PAZ_dom 324 450
IPR032474 Argonaute_N 124 258
No external refs found!