Zm00001e030798_P003

Description : no hits & (original description: none)

Gene families : OG0000491 (Archaeplastida) Phylogenetic Tree(s): OG0000491_tree ,
OG_05_0000417 (LandPlants) Phylogenetic Tree(s): OG_05_0000417_tree ,
OG_06_0000288 (SeedPlants) Phylogenetic Tree(s): OG_06_0000288_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Zm00001e030798_P003
Cluster	HCCA: Cluster_191

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00002p00264270	evm_27.TU.AmTr_v1...	Chromatin organisation.histones.H1 linker histone	0.05	Archaeplastida
Gb_40199	No alias	linker histone (H1)	0.03	Archaeplastida
Solyc09g066100.3.1	No alias	linker histone (H1)	0.03	Archaeplastida

Type	GO Term	Name	Evidence	Source
CC	GO:0000786	nucleosome	IEA	Interproscan
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006325	chromatin organization	None	Extended
BP	GO:0006334	nucleosome assembly	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0022607	cellular component assembly	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
CC	GO:0032993	protein-DNA complex	None	Extended
CC	GO:0033643	host cell part	None	Extended
CC	GO:0033646	host intracellular part	None	Extended
CC	GO:0033647	host intracellular organelle	None	Extended
CC	GO:0033648	host intracellular membrane-bounded organelle	None	Extended
BP	GO:0034622	cellular protein-containing complex assembly	None	Extended
BP	GO:0034728	nucleosome organization	None	Extended
CC	GO:0042025	host cell nucleus	IEA	Interproscan
BP	GO:0043933	protein-containing complex subunit organization	None	Extended
CC	GO:0044217	other organism part	None	Extended
CC	GO:0044422	organelle part	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044427	chromosomal part	None	Extended
CC	GO:0044446	intracellular organelle part	None	Extended
CC	GO:0044464	cell part	None	Extended
CC	GO:0044815	DNA packaging complex	None	Extended
BP	GO:0065003	protein-containing complex assembly	None	Extended
BP	GO:0065004	protein-DNA complex assembly	None	Extended
BP	GO:0071824	protein-DNA complex subunit organization	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0000145	exocyst	IEP	Neighborhood
BP	GO:0000160	phosphorelay signal transduction system	IEP	Neighborhood
MF	GO:0000287	magnesium ion binding	IEP	Neighborhood
BP	GO:0006887	exocytosis	IEP	Neighborhood
MF	GO:0016765	transferase activity, transferring alkyl or aryl (other than methyl) groups	IEP	Neighborhood
MF	GO:0019842	vitamin binding	IEP	Neighborhood
MF	GO:0030976	thiamine pyrophosphate binding	IEP	Neighborhood
BP	GO:0032940	secretion by cell	IEP	Neighborhood
BP	GO:0035556	intracellular signal transduction	IEP	Neighborhood
CC	GO:0044448	cell cortex part	IEP	Neighborhood
BP	GO:0046903	secretion	IEP	Neighborhood
CC	GO:0099023	tethering complex	IEP	Neighborhood
MF	GO:1901681	sulfur compound binding	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR005818	Histone_H1/H5_H15	19	81
IPR017956	AT_hook_DNA-bd_motif	409	418
IPR017956	AT_hook_DNA-bd_motif	109	120
IPR017956	AT_hook_DNA-bd_motif	352	361
IPR017956	AT_hook_DNA-bd_motif	239	249
IPR017956	AT_hook_DNA-bd_motif	490	499
IPR017956	AT_hook_DNA-bd_motif	134	145
IPR017956	AT_hook_DNA-bd_motif	172	182
IPR017956	AT_hook_DNA-bd_motif	516	527
IPR017956	AT_hook_DNA-bd_motif	321	331
IPR017956	AT_hook_DNA-bd_motif	431	440

External Links

No external refs found!

Zm00001e030798_P003

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation