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  5. Zm00001e030837_P006

Zm00001e030837_P006


Description : Probable RNA-binding protein ARP1 OS=Arabidopsis thaliana (sp|q9m1s3|arp1_arath : 100.0)


Gene families : OG0000639 (Archaeplastida) Phylogenetic Tree(s): OG0000639_tree ,
OG_05_0013011 (LandPlants) Phylogenetic Tree(s): OG_05_0013011_tree ,
OG_06_0013058 (SeedPlants) Phylogenetic Tree(s): OG_06_0013058_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e030837_P006
Cluster HCCA: Cluster_228

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00099p00115860 evm_27.TU.AmTr_v1... Probable RNA-binding protein ARP1 OS=Arabidopsis thaliana 0.03 Archaeplastida
AT1G22330 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.04 Archaeplastida
AT1G78260 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.02 Archaeplastida
AT3G54770 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.03 Archaeplastida
AT5G53720 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.03 Archaeplastida
Gb_39269 No alias Probable RNA-binding protein ARP1 OS=Arabidopsis... 0.02 Archaeplastida
LOC_Os06g11730.1 No alias Probable RNA-binding protein ARP1 OS=Arabidopsis... 0.04 Archaeplastida
MA_1682g0010 No alias Probable RNA-binding protein ARP1 OS=Arabidopsis... 0.03 Archaeplastida
Mp8g04430.1 No alias Probable RNA-binding protein ARP1 OS=Arabidopsis... 0.03 Archaeplastida
Pp3c10_3350V3.1 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.04 Archaeplastida
Solyc04g049920.4.1 No alias Probable RNA-binding protein ARP1 OS=Arabidopsis... 0.04 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEP Neighborhood
BP GO:0006355 regulation of transcription, DNA-templated IEP Neighborhood
BP GO:0009889 regulation of biosynthetic process IEP Neighborhood
BP GO:0010468 regulation of gene expression IEP Neighborhood
BP GO:0010556 regulation of macromolecule biosynthetic process IEP Neighborhood
MF GO:0016846 carbon-sulfur lyase activity IEP Neighborhood
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0019222 regulation of metabolic process IEP Neighborhood
MF GO:0030976 thiamine pyrophosphate binding IEP Neighborhood
BP GO:0031323 regulation of cellular metabolic process IEP Neighborhood
BP GO:0031326 regulation of cellular biosynthetic process IEP Neighborhood
BP GO:0050789 regulation of biological process IEP Neighborhood
BP GO:0050794 regulation of cellular process IEP Neighborhood
BP GO:0051171 regulation of nitrogen compound metabolic process IEP Neighborhood
BP GO:0051252 regulation of RNA metabolic process IEP Neighborhood
BP GO:0060255 regulation of macromolecule metabolic process IEP Neighborhood
BP GO:0065007 biological regulation IEP Neighborhood
BP GO:0080090 regulation of primary metabolic process IEP Neighborhood
MF GO:1901681 sulfur compound binding IEP Neighborhood
BP GO:1903506 regulation of nucleic acid-templated transcription IEP Neighborhood
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP Neighborhood
BP GO:2001141 regulation of RNA biosynthetic process IEP Neighborhood
InterPro domains Description Start Stop
IPR000504 RRM_dom 32 76
No external refs found!