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  5. Zm00001e030912_P001

Zm00001e030912_P001


Description : Pentatricopeptide repeat-containing protein At3g61520, mitochondrial OS=Arabidopsis thaliana (sp|q9m316|pp292_arath : 378.0)


Gene families : OG0005947 (Archaeplastida) Phylogenetic Tree(s): OG0005947_tree ,
OG_05_0008632 (LandPlants) Phylogenetic Tree(s): OG_05_0008632_tree ,
OG_06_0007041 (SeedPlants) Phylogenetic Tree(s): OG_06_0007041_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e030912_P001
Cluster HCCA: Cluster_229

Target Alias Description ECC score Gene Family Method Actions
AT4G20740 No alias Pentatricopeptide repeat (PPR-like) superfamily protein 0.04 Archaeplastida
GSVIVT01000864001 No alias Pentatricopeptide repeat-containing protein At4g20740... 0.03 Archaeplastida
LOC_Os07g08180.2 No alias Pentatricopeptide repeat-containing protein At4g20740... 0.04 Archaeplastida
Smo121399 No alias Putative pentatricopeptide repeat-containing protein... 0.03 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEP Neighborhood
MF GO:0043167 ion binding IEP Neighborhood
MF GO:0043169 cation binding IEP Neighborhood
MF GO:0046872 metal ion binding IEP Neighborhood
MF GO:0046914 transition metal ion binding IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 162 193
IPR002885 Pentatricopeptide_repeat 446 478
IPR002885 Pentatricopeptide_repeat 381 429
IPR002885 Pentatricopeptide_repeat 485 532
IPR002885 Pentatricopeptide_repeat 238 287
IPR002885 Pentatricopeptide_repeat 133 160
IPR002885 Pentatricopeptide_repeat 313 342
No external refs found!