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Description : cohesin cofactor (PDS5)
Gene families : OG0000410 (Archaeplastida) Phylogenetic Tree(s): OG0000410_tree ,
OG_05_0002118 (LandPlants) Phylogenetic Tree(s): OG_05_0002118_tree ,
OG_06_0002144 (SeedPlants) Phylogenetic Tree(s): OG_06_0002144_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: Zm00001e030989_P001 | |
| Cluster | HCCA: Cluster_216 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AMTR_s00017p00192140 | evm_27.TU.AmTr_v1... | Cell cycle.mitosis and meiosis.sister chromatid... | 0.06 | Archaeplastida | |
| AMTR_s00061p00213120 | evm_27.TU.AmTr_v1... | Cell cycle.mitosis and meiosis.sister chromatid... | 0.03 | Archaeplastida | |
| AMTR_s00065p00174980 | evm_27.TU.AmTr_v1... | Cell cycle.mitosis and meiosis.sister chromatid... | 0.06 | Archaeplastida | |
| AT1G15940 | No alias | Tudor/PWWP/MBT superfamily protein | 0.05 | Archaeplastida | |
| AT1G80810 | No alias | Tudor/PWWP/MBT superfamily protein | 0.03 | Archaeplastida | |
| AT4G31880 | No alias | LOCATED IN: cytosol, chloroplast; EXPRESSED IN: 24 plant... | 0.08 | Archaeplastida | |
| AT5G47690 | No alias | binding | 0.11 | Archaeplastida | |
| GSVIVT01002731001 | No alias | Cell cycle.mitosis and meiosis.sister chromatid... | 0.04 | Archaeplastida | |
| GSVIVT01002824001 | No alias | No description available | 0.13 | Archaeplastida | |
| GSVIVT01008876001 | No alias | Cell cycle.mitosis and meiosis.sister chromatid... | 0.04 | Archaeplastida | |
| GSVIVT01023587001 | No alias | Cell cycle.mitosis and meiosis.sister chromatid... | 0.07 | Archaeplastida | |
| GSVIVT01035890001 | No alias | Cell cycle.mitosis and meiosis.sister chromatid... | 0.04 | Archaeplastida | |
| Gb_02487 | No alias | cohesin cofactor (PDS5) | 0.04 | Archaeplastida | |
| Gb_06732 | No alias | cohesin cofactor (PDS5) | 0.03 | Archaeplastida | |
| Gb_09525 | No alias | cohesin cofactor (PDS5) | 0.06 | Archaeplastida | |
| Gb_12481 | No alias | cohesin cofactor (PDS5) | 0.03 | Archaeplastida | |
| Gb_23673 | No alias | cohesin cofactor (PDS5) | 0.03 | Archaeplastida | |
| LOC_Os02g39920.1 | No alias | cohesin cofactor (PDS5) | 0.02 | Archaeplastida | |
| LOC_Os06g17840.1 | No alias | cohesin cofactor (PDS5) | 0.16 | Archaeplastida | |
| MA_10093130g0010 | No alias | no hits & (original description: none) | 0.02 | Archaeplastida | |
| MA_10240847g0010 | No alias | cohesin cofactor (PDS5) | 0.02 | Archaeplastida | |
| MA_10426926g0010 | No alias | cohesin cofactor (PDS5) | 0.06 | Archaeplastida | |
| MA_10433886g0010 | No alias | cohesin cofactor (PDS5) | 0.05 | Archaeplastida | |
| MA_10434055g0010 | No alias | cohesin cofactor (PDS5) | 0.04 | Archaeplastida | |
| MA_10434304g0010 | No alias | cohesin cofactor (PDS5) | 0.04 | Archaeplastida | |
| MA_180523g0010 | No alias | cohesin cofactor (PDS5) | 0.04 | Archaeplastida | |
| MA_214607g0010 | No alias | cohesin cofactor (PDS5) | 0.06 | Archaeplastida | |
| MA_25261g0010 | No alias | no hits & (original description: none) | 0.08 | Archaeplastida | |
| MA_523g0010 | No alias | no hits & (original description: none) | 0.03 | Archaeplastida | |
| MA_815998g0010 | No alias | cohesin cofactor (PDS5) | 0.02 | Archaeplastida | |
| Mp3g13850.1 | No alias | cohesin cofactor (PDS5) | 0.04 | Archaeplastida | |
| Pp3c10_24900V3.1 | No alias | binding | 0.13 | Archaeplastida | |
| Pp3c20_23000V3.1 | No alias | binding | 0.08 | Archaeplastida | |
| Pp3c23_10270V3.1 | No alias | binding | 0.13 | Archaeplastida | |
| Solyc03g117010.4.1 | No alias | cohesin cofactor (PDS5) | 0.03 | Archaeplastida | |
| Solyc06g060380.3.1 | No alias | cohesin cofactor (PDS5) | 0.03 | Archaeplastida | |
| Solyc06g065710.3.1 | No alias | cohesin cofactor (PDS5) | 0.08 | Archaeplastida | |
| Solyc11g012770.2.1 | No alias | cohesin cofactor (PDS5) | 0.11 | Archaeplastida | |
| Zm00001e007658_P001 | No alias | cohesin cofactor (PDS5) | 0.04 | Archaeplastida | |
| Zm00001e019144_P001 | No alias | no hits & (original description: none) | 0.03 | Archaeplastida |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| CC | GO:0000148 | 1,3-beta-D-glucan synthase complex | IEP | Neighborhood |
| MF | GO:0000166 | nucleotide binding | IEP | Neighborhood |
| MF | GO:0003674 | molecular_function | IEP | Neighborhood |
| MF | GO:0003676 | nucleic acid binding | IEP | Neighborhood |
| MF | GO:0003677 | DNA binding | IEP | Neighborhood |
| MF | GO:0003729 | mRNA binding | IEP | Neighborhood |
| MF | GO:0003843 | 1,3-beta-D-glucan synthase activity | IEP | Neighborhood |
| MF | GO:0004386 | helicase activity | IEP | Neighborhood |
| MF | GO:0004484 | mRNA guanylyltransferase activity | IEP | Neighborhood |
| MF | GO:0004721 | phosphoprotein phosphatase activity | IEP | Neighborhood |
| MF | GO:0005488 | binding | IEP | Neighborhood |
| MF | GO:0005515 | protein binding | IEP | Neighborhood |
| MF | GO:0005524 | ATP binding | IEP | Neighborhood |
| CC | GO:0005685 | U1 snRNP | IEP | Neighborhood |
| CC | GO:0005694 | chromosome | IEP | Neighborhood |
| BP | GO:0006074 | (1->3)-beta-D-glucan metabolic process | IEP | Neighborhood |
| BP | GO:0006075 | (1->3)-beta-D-glucan biosynthetic process | IEP | Neighborhood |
| BP | GO:0006139 | nucleobase-containing compound metabolic process | IEP | Neighborhood |
| BP | GO:0006325 | chromatin organization | IEP | Neighborhood |
| BP | GO:0006354 | DNA-templated transcription, elongation | IEP | Neighborhood |
| BP | GO:0006368 | transcription elongation from RNA polymerase II promoter | IEP | Neighborhood |
| BP | GO:0006370 | 7-methylguanosine mRNA capping | IEP | Neighborhood |
| BP | GO:0006376 | mRNA splice site selection | IEP | Neighborhood |
| BP | GO:0006396 | RNA processing | IEP | Neighborhood |
| BP | GO:0006397 | mRNA processing | IEP | Neighborhood |
| BP | GO:0006476 | protein deacetylation | IEP | Neighborhood |
| BP | GO:0006508 | proteolysis | IEP | Neighborhood |
| BP | GO:0006606 | protein import into nucleus | IEP | Neighborhood |
| BP | GO:0006725 | cellular aromatic compound metabolic process | IEP | Neighborhood |
| BP | GO:0006807 | nitrogen compound metabolic process | IEP | Neighborhood |
| BP | GO:0006913 | nucleocytoplasmic transport | IEP | Neighborhood |
| BP | GO:0006996 | organelle organization | IEP | Neighborhood |
| CC | GO:0008023 | transcription elongation factor complex | IEP | Neighborhood |
| MF | GO:0008138 | protein tyrosine/serine/threonine phosphatase activity | IEP | Neighborhood |
| MF | GO:0008144 | drug binding | IEP | Neighborhood |
| MF | GO:0008192 | RNA guanylyltransferase activity | IEP | Neighborhood |
| MF | GO:0008233 | peptidase activity | IEP | Neighborhood |
| MF | GO:0008234 | cysteine-type peptidase activity | IEP | Neighborhood |
| MF | GO:0008270 | zinc ion binding | IEP | Neighborhood |
| BP | GO:0009452 | 7-methylguanosine RNA capping | IEP | Neighborhood |
| BP | GO:0009987 | cellular process | IEP | Neighborhood |
| BP | GO:0016043 | cellular component organization | IEP | Neighborhood |
| BP | GO:0016070 | RNA metabolic process | IEP | Neighborhood |
| BP | GO:0016071 | mRNA metabolic process | IEP | Neighborhood |
| BP | GO:0016311 | dephosphorylation | IEP | Neighborhood |
| BP | GO:0016569 | covalent chromatin modification | IEP | Neighborhood |
| BP | GO:0016570 | histone modification | IEP | Neighborhood |
| BP | GO:0016575 | histone deacetylation | IEP | Neighborhood |
| BP | GO:0016579 | protein deubiquitination | IEP | Neighborhood |
| CC | GO:0016593 | Cdc73/Paf1 complex | IEP | Neighborhood |
| BP | GO:0017038 | protein import | IEP | Neighborhood |
| MF | GO:0017076 | purine nucleotide binding | IEP | Neighborhood |
| MF | GO:0019783 | ubiquitin-like protein-specific protease activity | IEP | Neighborhood |
| BP | GO:0022618 | ribonucleoprotein complex assembly | IEP | Neighborhood |
| CC | GO:0030532 | small nuclear ribonucleoprotein complex | IEP | Neighborhood |
| MF | GO:0030554 | adenyl nucleotide binding | IEP | Neighborhood |
| MF | GO:0031625 | ubiquitin protein ligase binding | IEP | Neighborhood |
| MF | GO:0032553 | ribonucleotide binding | IEP | Neighborhood |
| MF | GO:0032555 | purine ribonucleotide binding | IEP | Neighborhood |
| MF | GO:0032559 | adenyl ribonucleotide binding | IEP | Neighborhood |
| BP | GO:0032774 | RNA biosynthetic process | IEP | Neighborhood |
| BP | GO:0033365 | protein localization to organelle | IEP | Neighborhood |
| BP | GO:0034504 | protein localization to nucleus | IEP | Neighborhood |
| BP | GO:0034613 | cellular protein localization | IEP | Neighborhood |
| BP | GO:0035601 | protein deacylation | IEP | Neighborhood |
| MF | GO:0035639 | purine ribonucleoside triphosphate binding | IEP | Neighborhood |
| MF | GO:0036094 | small molecule binding | IEP | Neighborhood |
| BP | GO:0036260 | RNA capping | IEP | Neighborhood |
| MF | GO:0036459 | thiol-dependent ubiquitinyl hydrolase activity | IEP | Neighborhood |
| MF | GO:0043167 | ion binding | IEP | Neighborhood |
| MF | GO:0043168 | anion binding | IEP | Neighborhood |
| BP | GO:0043170 | macromolecule metabolic process | IEP | Neighborhood |
| BP | GO:0044237 | cellular metabolic process | IEP | Neighborhood |
| BP | GO:0044260 | cellular macromolecule metabolic process | IEP | Neighborhood |
| MF | GO:0044389 | ubiquitin-like protein ligase binding | IEP | Neighborhood |
| CC | GO:0044428 | nuclear part | IEP | Neighborhood |
| CC | GO:0044464 | cell part | IEP | Neighborhood |
| BP | GO:0046483 | heterocycle metabolic process | IEP | Neighborhood |
| BP | GO:0051169 | nuclear transport | IEP | Neighborhood |
| BP | GO:0051170 | import into nucleus | IEP | Neighborhood |
| BP | GO:0051276 | chromosome organization | IEP | Neighborhood |
| MF | GO:0070011 | peptidase activity, acting on L-amino acid peptides | IEP | Neighborhood |
| MF | GO:0070568 | guanylyltransferase activity | IEP | Neighborhood |
| BP | GO:0070646 | protein modification by small protein removal | IEP | Neighborhood |
| BP | GO:0070647 | protein modification by small protein conjugation or removal | IEP | Neighborhood |
| BP | GO:0070727 | cellular macromolecule localization | IEP | Neighborhood |
| BP | GO:0071826 | ribonucleoprotein complex subunit organization | IEP | Neighborhood |
| BP | GO:0071840 | cellular component organization or biogenesis | IEP | Neighborhood |
| BP | GO:0072594 | establishment of protein localization to organelle | IEP | Neighborhood |
| BP | GO:0090304 | nucleic acid metabolic process | IEP | Neighborhood |
| MF | GO:0097159 | organic cyclic compound binding | IEP | Neighborhood |
| MF | GO:0097367 | carbohydrate derivative binding | IEP | Neighborhood |
| CC | GO:0097525 | spliceosomal snRNP complex | IEP | Neighborhood |
| BP | GO:0098732 | macromolecule deacylation | IEP | Neighborhood |
| CC | GO:0098797 | plasma membrane protein complex | IEP | Neighborhood |
| MF | GO:0101005 | ubiquitinyl hydrolase activity | IEP | Neighborhood |
| CC | GO:0120114 | Sm-like protein family complex | IEP | Neighborhood |
| MF | GO:1901265 | nucleoside phosphate binding | IEP | Neighborhood |
| BP | GO:1901360 | organic cyclic compound metabolic process | IEP | Neighborhood |
| MF | GO:1901363 | heterocyclic compound binding | IEP | Neighborhood |
No InterPro domains available for this sequence
| No external refs found! |