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  5. Zm00001e031438_P002

Zm00001e031438_P002


Description : Ethylene-responsive transcription factor RAP2-3 OS=Arabidopsis thaliana (sp|p42736|rap23_arath : 109.0)


Gene families : OG0000003 (Archaeplastida) Phylogenetic Tree(s): No tree available for this family ,
OG_05_0000001 (LandPlants) Phylogenetic Tree(s): OG_05_0000001_tree ,
OG_06_0000007 (SeedPlants) Phylogenetic Tree(s): OG_06_0000007_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e031438_P002
Cluster HCCA: Cluster_211

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00002p00264660 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.AP2/ERF... 0.04 Archaeplastida
AMTR_s00007p00268280 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.AP2/ERF... 0.03 Archaeplastida
AMTR_s00016p00092590 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.AP2/ERF... 0.02 Archaeplastida
AMTR_s00049p00214620 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.AP2/ERF... 0.02 Archaeplastida
AMTR_s00056p00064760 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.AP2/ERF... 0.04 Archaeplastida
AT1G22190 No alias Integrase-type DNA-binding superfamily protein 0.02 Archaeplastida
AT1G50640 ATERF3, ERF3 ethylene responsive element binding factor 3 0.04 Archaeplastida
AT1G78080 RAP2.4 related to AP2 4 0.03 Archaeplastida
AT4G11140 CRF1 cytokinin response factor 1 0.03 Archaeplastida
AT4G17490 ERF-6-6, ERF6, ATERF6 ethylene responsive element binding factor 6 0.03 Archaeplastida
AT5G50080 ERF110 ethylene response factor 110 0.02 Archaeplastida
GSVIVT01002195001 No alias RNA biosynthesis.transcriptional activation.AP2/ERF... 0.03 Archaeplastida
GSVIVT01005747001 No alias RNA biosynthesis.transcriptional activation.AP2/ERF... 0.03 Archaeplastida
GSVIVT01006277001 No alias RNA biosynthesis.transcriptional activation.AP2/ERF... 0.02 Archaeplastida
GSVIVT01013916001 No alias RNA biosynthesis.transcriptional activation.AP2/ERF... 0.03 Archaeplastida
GSVIVT01020584001 No alias RNA biosynthesis.transcriptional activation.AP2/ERF... 0.02 Archaeplastida
GSVIVT01031387001 No alias RNA biosynthesis.transcriptional activation.AP2/ERF... 0.02 Archaeplastida
GSVIVT01031388001 No alias RNA biosynthesis.transcriptional activation.AP2/ERF... 0.03 Archaeplastida
GSVIVT01035852001 No alias RNA biosynthesis.transcriptional activation.AP2/ERF... 0.04 Archaeplastida
GSVIVT01036228001 No alias RNA biosynthesis.transcriptional activation.AP2/ERF... 0.03 Archaeplastida
Gb_07226 No alias transcription factor (ERF) 0.02 Archaeplastida
Gb_07475 No alias no hits & (original description: none) 0.02 Archaeplastida
Gb_07476 No alias transcription factor (ERF) 0.02 Archaeplastida
Gb_11794 No alias transcription factor (DREB) 0.05 Archaeplastida
Gb_26662 No alias transcription factor (ERF) 0.03 Archaeplastida
Gb_29220 No alias transcription factor (ERF) 0.02 Archaeplastida
Gb_29359 No alias transcription factor (ERF). transcription factor (ERN1) 0.02 Archaeplastida
Gb_32995 No alias Ethylene-responsive transcription factor ERF016... 0.02 Archaeplastida
Gb_34849 No alias transcription factor (ERF) 0.03 Archaeplastida
LOC_Os02g09650.1 No alias transcription factor (ERF) 0.03 Archaeplastida
LOC_Os02g43820.1 No alias transcription factor (ERF) 0.03 Archaeplastida
LOC_Os02g43940.1 No alias transcription factor (DREB) 0.05 Archaeplastida
LOC_Os02g43970.1 No alias transcription factor (DREB) 0.03 Archaeplastida
LOC_Os03g08470.1 No alias Ethylene-responsive transcription factor 1 OS=Oryza... 0.03 Archaeplastida
LOC_Os03g08500.2 No alias no hits & (original description: none) 0.03 Archaeplastida
LOC_Os04g46240.1 No alias transcription factor (ERF) 0.04 Archaeplastida
LOC_Os04g46250.1 No alias transcription factor (ERF) 0.04 Archaeplastida
LOC_Os04g46410.1 No alias transcription factor (DREB) 0.03 Archaeplastida
LOC_Os04g55520.1 No alias transcription factor (DREB) 0.02 Archaeplastida
LOC_Os05g25260.1 No alias transcription factor (ERF) 0.03 Archaeplastida
LOC_Os05g29810.1 No alias transcription factor (ERF) 0.03 Archaeplastida
LOC_Os06g47590.1 No alias no hits & (original description: none) 0.02 Archaeplastida
LOC_Os08g41030.1 No alias no hits & (original description: none) 0.02 Archaeplastida
LOC_Os11g06770.2 No alias transcription factor (ERF) 0.02 Archaeplastida
LOC_Os11g13840.1 No alias transcription factor (DREB) 0.03 Archaeplastida
MA_10431706g0010 No alias no hits & (original description: none) 0.03 Archaeplastida
MA_115502g0010 No alias transcription factor (DREB) 0.04 Archaeplastida
MA_18454g0020 No alias transcription factor (ERF) 0.04 Archaeplastida
MA_198113g0010 No alias Ethylene-responsive transcription factor 1A... 0.04 Archaeplastida
MA_500288g0010 No alias transcription factor (DREB) 0.03 Archaeplastida
MA_647924g0010 No alias transcription factor (DREB) 0.02 Archaeplastida
MA_93229g0010 No alias transcription factor (ERF) 0.02 Archaeplastida
MA_94228g0010 No alias transcription factor (ERF). SHN-type cutin and suberin... 0.04 Archaeplastida
MA_9905g0010 No alias transcription factor (ERF) 0.02 Archaeplastida
Pp3c1_27630V3.1 No alias Integrase-type DNA-binding superfamily protein 0.03 Archaeplastida
Smo104980 No alias RNA biosynthesis.transcriptional activation.AP2/ERF... 0.03 Archaeplastida
Smo92334 No alias Cell wall.cutin and suberin.biosynthesis... 0.04 Archaeplastida
Solyc03g093550.1.1 No alias transcription factor (ERF) 0.07 Archaeplastida
Solyc06g066540.1.1 No alias transcription factor (DREB) 0.03 Archaeplastida
Solyc10g006130.1.1 No alias transcription factor (ERF) 0.03 Archaeplastida
Solyc10g009110.1.1 No alias transcription factor (ERF) 0.03 Archaeplastida
Solyc12g005960.3.1 No alias transcription factor (ERF) 0.06 Archaeplastida
Zm00001e015219_P001 No alias transcription factor (DREB) 0.04 Archaeplastida
Zm00001e015327_P001 No alias transcription factor (DREB) 0.04 Archaeplastida
Zm00001e024001_P001 No alias no hits & (original description: none) 0.06 Archaeplastida
Zm00001e029041_P001 No alias no hits & (original description: none) 0.04 Archaeplastida
Zm00001e033965_P001 No alias transcription factor (DREB) 0.03 Archaeplastida
Zm00001e038888_P001 No alias transcription factor (DREB) 0.02 Archaeplastida
Zm00001e041781_P001 No alias transcription factor (DREB) 0.04 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEA Interproscan
BP GO:0006355 regulation of transcription, DNA-templated IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEP Neighborhood
MF GO:0003677 DNA binding IEP Neighborhood
BP GO:0006325 chromatin organization IEP Neighborhood
BP GO:0006334 nucleosome assembly IEP Neighborhood
BP GO:0022607 cellular component assembly IEP Neighborhood
CC GO:0032993 protein-DNA complex IEP Neighborhood
BP GO:0034622 cellular protein-containing complex assembly IEP Neighborhood
BP GO:0034728 nucleosome organization IEP Neighborhood
BP GO:0043933 protein-containing complex subunit organization IEP Neighborhood
CC GO:0044427 chromosomal part IEP Neighborhood
CC GO:0044815 DNA packaging complex IEP Neighborhood
BP GO:0065003 protein-containing complex assembly IEP Neighborhood
BP GO:0065004 protein-DNA complex assembly IEP Neighborhood
BP GO:0071824 protein-DNA complex subunit organization IEP Neighborhood
InterPro domains Description Start Stop
IPR001471 AP2/ERF_dom 52 101
No external refs found!