Description : Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 5 OS=Arabidopsis thaliana (sp|q9fgh2|lsh5_arath : 229.0)
Gene families : OG0000579 (Archaeplastida) Phylogenetic Tree(s): OG0000579_tree ,
OG_05_0000324 (LandPlants) Phylogenetic Tree(s): OG_05_0000324_tree ,
OG_06_0000239 (SeedPlants) Phylogenetic Tree(s): OG_06_0000239_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | HRR: Zm00001e031512_P001 | |
Cluster | HCCA: Cluster_222 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
AMTR_s00153p00047660 | evm_27.TU.AmTr_v1... | Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 6... | 0.03 | Archaeplastida | |
AMTR_s00155p00022580 | evm_27.TU.AmTr_v1... | Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3... | 0.03 | Archaeplastida | |
AT1G07090 | LSH6 | Protein of unknown function (DUF640) | 0.03 | Archaeplastida | |
AT1G78815 | LSH7 | Protein of unknown function (DUF640) | 0.04 | Archaeplastida | |
AT2G42610 | LSH10 | Protein of unknown function (DUF640) | 0.03 | Archaeplastida | |
AT3G04510 | LSH2 | Protein of unknown function (DUF640) | 0.03 | Archaeplastida | |
AT3G23290 | LSH4 | No description available | 0.04 | Archaeplastida | |
AT5G28490 | LSH1 | Protein of unknown function (DUF640) | 0.03 | Archaeplastida | |
AT5G58500 | LSH5 | Protein of unknown function (DUF640) | 0.04 | Archaeplastida | |
GSVIVT01020708001 | No alias | Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10... | 0.04 | Archaeplastida | |
GSVIVT01021215001 | No alias | Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10... | 0.05 | Archaeplastida | |
GSVIVT01021754001 | No alias | Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3... | 0.03 | Archaeplastida | |
GSVIVT01023521001 | No alias | Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4... | 0.04 | Archaeplastida | |
Gb_15426 | No alias | Protein G1-like5 OS=Oryza sativa subsp. japonica... | 0.02 | Archaeplastida | |
LOC_Os05g28040.1 | No alias | Protein G1-like9 OS=Oryza sativa subsp. indica... | 0.03 | Archaeplastida | |
LOC_Os05g39500.1 | No alias | Protein G1-like8 OS=Oryza sativa subsp. japonica... | 0.07 | Archaeplastida | |
MA_12926g0010 | No alias | Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3... | 0.02 | Archaeplastida | |
Mp2g00330.1 | No alias | Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3... | 0.03 | Archaeplastida | |
Pp3c8_6310V3.1 | No alias | Protein of unknown function (DUF640) | 0.02 | Archaeplastida | |
Solyc02g076820.4.1 | No alias | No annotation | 0.02 | Archaeplastida | |
Solyc04g009980.4.1 | No alias | Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 5... | 0.05 | Archaeplastida | |
Solyc06g082210.1.1 | No alias | Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 6... | 0.05 | Archaeplastida | |
Solyc06g083860.2.1 | No alias | Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3... | 0.04 | Archaeplastida | |
Solyc10g007310.1.1 | No alias | Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10... | 0.02 | Archaeplastida | |
Solyc10g008000.1.1 | No alias | Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10... | 0.03 | Archaeplastida | |
Solyc12g014260.1.1 | No alias | Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10... | 0.03 | Archaeplastida | |
Zm00001e019403_P001 | No alias | Protein G1-like7 OS=Oryza sativa subsp. indica... | 0.04 | Archaeplastida |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
No GO annotation available for this sequence |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003677 | DNA binding | IEP | Neighborhood |
BP | GO:0006355 | regulation of transcription, DNA-templated | IEP | Neighborhood |
MF | GO:0008080 | N-acetyltransferase activity | IEP | Neighborhood |
BP | GO:0009889 | regulation of biosynthetic process | IEP | Neighborhood |
BP | GO:0010468 | regulation of gene expression | IEP | Neighborhood |
BP | GO:0010556 | regulation of macromolecule biosynthetic process | IEP | Neighborhood |
MF | GO:0016407 | acetyltransferase activity | IEP | Neighborhood |
MF | GO:0016410 | N-acyltransferase activity | IEP | Neighborhood |
BP | GO:0019219 | regulation of nucleobase-containing compound metabolic process | IEP | Neighborhood |
BP | GO:0019222 | regulation of metabolic process | IEP | Neighborhood |
BP | GO:0031323 | regulation of cellular metabolic process | IEP | Neighborhood |
BP | GO:0031326 | regulation of cellular biosynthetic process | IEP | Neighborhood |
BP | GO:0040008 | regulation of growth | IEP | Neighborhood |
BP | GO:0045927 | positive regulation of growth | IEP | Neighborhood |
BP | GO:0048518 | positive regulation of biological process | IEP | Neighborhood |
BP | GO:0050789 | regulation of biological process | IEP | Neighborhood |
BP | GO:0050794 | regulation of cellular process | IEP | Neighborhood |
BP | GO:0051171 | regulation of nitrogen compound metabolic process | IEP | Neighborhood |
BP | GO:0051252 | regulation of RNA metabolic process | IEP | Neighborhood |
BP | GO:0060255 | regulation of macromolecule metabolic process | IEP | Neighborhood |
BP | GO:0065007 | biological regulation | IEP | Neighborhood |
BP | GO:0080090 | regulation of primary metabolic process | IEP | Neighborhood |
BP | GO:1903506 | regulation of nucleic acid-templated transcription | IEP | Neighborhood |
BP | GO:2000112 | regulation of cellular macromolecule biosynthetic process | IEP | Neighborhood |
BP | GO:2001141 | regulation of RNA biosynthetic process | IEP | Neighborhood |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR006936 | ALOG_dom | 74 | 196 |
No external refs found! |