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  5. Zm00001e031975_P003

Zm00001e031975_P003


Description : component NOT2 of mRNA deadenylation CCR4-NOT complex


Gene families : OG0002697 (Archaeplastida) Phylogenetic Tree(s): OG0002697_tree ,
OG_05_0002794 (LandPlants) Phylogenetic Tree(s): OG_05_0002794_tree ,
OG_06_0003018 (SeedPlants) Phylogenetic Tree(s): OG_06_0003018_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e031975_P003
Cluster HCCA: Cluster_290

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00016p00180540 evm_27.TU.AmTr_v1... RNA processing.RNA decay.deadenylation-dependent... 0.05 Archaeplastida
AT1G07705 No alias NOT2 / NOT3 / NOT5 family 0.06 Archaeplastida
Cpa|evm.model.tig00020554.138 No alias RNA processing.RNA decay.deadenylation-dependent... 0.02 Archaeplastida
GSVIVT01025059001 No alias RNA processing.RNA decay.deadenylation-dependent... 0.03 Archaeplastida
MA_19243g0010 No alias component NOT2 of mRNA deadenylation CCR4-NOT complex 0.02 Archaeplastida
Mp1g21150.1 No alias component NOT2 of mRNA deadenylation CCR4-NOT complex 0.02 Archaeplastida
Pp3c10_21550V3.1 No alias NOT2 / NOT3 / NOT5 family 0.03 Archaeplastida
Pp3c20_22090V3.1 No alias VIRE2 interacting protein 2 0.03 Archaeplastida

Type GO Term Name Evidence Source
BP GO:0006355 regulation of transcription, DNA-templated IEA Interproscan
CC GO:0042025 host cell nucleus IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000139 Golgi membrane IEP Neighborhood
CC GO:0000775 chromosome, centromeric region IEP Neighborhood
MF GO:0003674 molecular_function IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003684 damaged DNA binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0004386 helicase activity IEP Neighborhood
MF GO:0005338 nucleotide-sugar transmembrane transporter activity IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
CC GO:0005634 nucleus IEP Neighborhood
CC GO:0005741 mitochondrial outer membrane IEP Neighborhood
BP GO:0006289 nucleotide-excision repair IEP Neighborhood
BP GO:0007059 chromosome segregation IEP Neighborhood
MF GO:0008170 N-methyltransferase activity IEP Neighborhood
MF GO:0008276 protein methyltransferase activity IEP Neighborhood
MF GO:0008375 acetylglucosaminyltransferase activity IEP Neighborhood
MF GO:0008536 Ran GTPase binding IEP Neighborhood
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP Neighborhood
BP GO:0010498 proteasomal protein catabolic process IEP Neighborhood
MF GO:0015165 pyrimidine nucleotide-sugar transmembrane transporter activity IEP Neighborhood
BP GO:0015780 nucleotide-sugar transmembrane transport IEP Neighborhood
BP GO:0015931 nucleobase-containing compound transport IEP Neighborhood
MF GO:0015932 nucleobase-containing compound transmembrane transporter activity IEP Neighborhood
BP GO:0016255 attachment of GPI anchor to protein IEP Neighborhood
MF GO:0016278 lysine N-methyltransferase activity IEP Neighborhood
MF GO:0016279 protein-lysine N-methyltransferase activity IEP Neighborhood
MF GO:0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor IEP Neighborhood
MF GO:0016903 oxidoreductase activity, acting on the aldehyde or oxo group of donors IEP Neighborhood
MF GO:0017016 Ras GTPase binding IEP Neighborhood
MF GO:0018024 histone-lysine N-methyltransferase activity IEP Neighborhood
CC GO:0019867 outer membrane IEP Neighborhood
BP GO:0022402 cell cycle process IEP Neighborhood
BP GO:0030163 protein catabolic process IEP Neighborhood
CC GO:0031090 organelle membrane IEP Neighborhood
MF GO:0031267 small GTPase binding IEP Neighborhood
CC GO:0031966 mitochondrial membrane IEP Neighborhood
CC GO:0031968 organelle outer membrane IEP Neighborhood
MF GO:0042054 histone methyltransferase activity IEP Neighborhood
CC GO:0042765 GPI-anchor transamidase complex IEP Neighborhood
MF GO:0043015 gamma-tubulin binding IEP Neighborhood
BP GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process IEP Neighborhood
CC GO:0043226 organelle IEP Neighborhood
CC GO:0043227 membrane-bounded organelle IEP Neighborhood
CC GO:0043229 intracellular organelle IEP Neighborhood
CC GO:0043231 intracellular membrane-bounded organelle IEP Neighborhood
CC GO:0044422 organelle part IEP Neighborhood
CC GO:0044424 intracellular part IEP Neighborhood
CC GO:0044429 mitochondrial part IEP Neighborhood
CC GO:0044431 Golgi apparatus part IEP Neighborhood
CC GO:0044432 endoplasmic reticulum part IEP Neighborhood
CC GO:0044444 cytoplasmic part IEP Neighborhood
CC GO:0044446 intracellular organelle part IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
BP GO:0045132 meiotic chromosome segregation IEP Neighborhood
MF GO:0051020 GTPase binding IEP Neighborhood
MF GO:0051287 NAD binding IEP Neighborhood
BP GO:0071702 organic substance transport IEP Neighborhood
BP GO:0071705 nitrogen compound transport IEP Neighborhood
BP GO:0090481 pyrimidine nucleotide-sugar transmembrane transport IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
CC GO:0098588 bounding membrane of organelle IEP Neighborhood
CC GO:0098687 chromosomal region IEP Neighborhood
CC GO:0098805 whole membrane IEP Neighborhood
BP GO:0098813 nuclear chromosome segregation IEP Neighborhood
BP GO:1901264 carbohydrate derivative transport IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
MF GO:1901505 carbohydrate derivative transmembrane transporter activity IEP Neighborhood
BP GO:1901565 organonitrogen compound catabolic process IEP Neighborhood
BP GO:1903046 meiotic cell cycle process IEP Neighborhood
InterPro domains Description Start Stop
IPR007282 NOT 521 642
No external refs found!