Zm00001e032062_P001


Description : non-core component Nhp2/Naf1 of H/ACA small nucleolar ribonucleoprotein (snoRNP) RNA pseudouridylation complex


Gene families : OG0004458 (Archaeplastida) Phylogenetic Tree(s): OG0004458_tree ,
OG_05_0004650 (LandPlants) Phylogenetic Tree(s): OG_05_0004650_tree ,
OG_06_0006012 (SeedPlants) Phylogenetic Tree(s): OG_06_0006012_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e032062_P001
Cluster HCCA: Cluster_276

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00003p00263450 evm_27.TU.AmTr_v1... RNA processing.RNA modification.pseudouridylation.H/ACA... 0.02 Archaeplastida
AT1G03530 NAF1, ATNAF1 nuclear assembly factor 1 0.04 Archaeplastida
Cre10.g467100 No alias RNA processing.RNA modification.pseudouridylation.H/ACA... 0.03 Archaeplastida
GSVIVT01030569001 No alias RNA processing.RNA modification.pseudouridylation.H/ACA... 0.03 Archaeplastida
Gb_27768 No alias non-core component Nhp2/Naf1 of H/ACA small nucleolar... 0.07 Archaeplastida
LOC_Os05g42300.1 No alias non-core component Nhp2/Naf1 of H/ACA small nucleolar... 0.05 Archaeplastida
MA_127987g0010 No alias non-core component Nhp2/Naf1 of H/ACA small nucleolar... 0.04 Archaeplastida
Mp8g14120.1 No alias non-core component Nhp2/Naf1 of H/ACA small nucleolar... 0.04 Archaeplastida
Solyc07g054460.4.1 No alias non-core component Nhp2/Naf1 of H/ACA small nucleolar... 0.04 Archaeplastida

Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEA Interproscan
BP GO:0042254 ribosome biogenesis IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Neighborhood
MF GO:0001882 nucleoside binding IEP Neighborhood
MF GO:0001883 purine nucleoside binding IEP Neighborhood
BP GO:0002097 tRNA wobble base modification IEP Neighborhood
BP GO:0002098 tRNA wobble uridine modification IEP Neighborhood
MF GO:0003674 molecular_function IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003690 double-stranded DNA binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0003922 GMP synthase (glutamine-hydrolyzing) activity IEP Neighborhood
MF GO:0004386 helicase activity IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
MF GO:0005524 ATP binding IEP Neighborhood
MF GO:0005525 GTP binding IEP Neighborhood
CC GO:0005634 nucleus IEP Neighborhood
BP GO:0006177 GMP biosynthetic process IEP Neighborhood
BP GO:0006351 transcription, DNA-templated IEP Neighborhood
BP GO:0006396 RNA processing IEP Neighborhood
BP GO:0006400 tRNA modification IEP Neighborhood
MF GO:0008144 drug binding IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
BP GO:0009119 ribonucleoside metabolic process IEP Neighborhood
BP GO:0009163 nucleoside biosynthetic process IEP Neighborhood
MF GO:0009982 pseudouridine synthase activity IEP Neighborhood
MF GO:0016462 pyrophosphatase activity IEP Neighborhood
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Neighborhood
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Neighborhood
MF GO:0016884 carbon-nitrogen ligase activity, with glutamine as amido-N-donor IEP Neighborhood
MF GO:0017076 purine nucleotide binding IEP Neighborhood
MF GO:0017111 nucleoside-triphosphatase activity IEP Neighborhood
BP GO:0018130 heterocycle biosynthetic process IEP Neighborhood
MF GO:0019001 guanyl nucleotide binding IEP Neighborhood
BP GO:0019438 aromatic compound biosynthetic process IEP Neighborhood
MF GO:0030554 adenyl nucleotide binding IEP Neighborhood
MF GO:0031625 ubiquitin protein ligase binding IEP Neighborhood
MF GO:0032549 ribonucleoside binding IEP Neighborhood
MF GO:0032550 purine ribonucleoside binding IEP Neighborhood
MF GO:0032553 ribonucleotide binding IEP Neighborhood
MF GO:0032555 purine ribonucleotide binding IEP Neighborhood
MF GO:0032559 adenyl ribonucleotide binding IEP Neighborhood
MF GO:0032561 guanyl ribonucleotide binding IEP Neighborhood
BP GO:0032774 RNA biosynthetic process IEP Neighborhood
CC GO:0033588 Elongator holoenzyme complex IEP Neighborhood
CC GO:0033643 host cell part IEP Neighborhood
CC GO:0033646 host intracellular part IEP Neighborhood
CC GO:0033647 host intracellular organelle IEP Neighborhood
CC GO:0033648 host intracellular membrane-bounded organelle IEP Neighborhood
BP GO:0034470 ncRNA processing IEP Neighborhood
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP Neighborhood
BP GO:0034660 ncRNA metabolic process IEP Neighborhood
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Neighborhood
MF GO:0036094 small molecule binding IEP Neighborhood
CC GO:0042025 host cell nucleus IEP Neighborhood
BP GO:0042278 purine nucleoside metabolic process IEP Neighborhood
BP GO:0042451 purine nucleoside biosynthetic process IEP Neighborhood
BP GO:0042455 ribonucleoside biosynthetic process IEP Neighborhood
MF GO:0043167 ion binding IEP Neighborhood
MF GO:0043168 anion binding IEP Neighborhood
CC GO:0043227 membrane-bounded organelle IEP Neighborhood
CC GO:0043231 intracellular membrane-bounded organelle IEP Neighborhood
CC GO:0044217 other organism part IEP Neighborhood
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Neighborhood
MF GO:0044389 ubiquitin-like protein ligase binding IEP Neighborhood
CC GO:0044445 cytosolic part IEP Neighborhood
BP GO:0046037 GMP metabolic process IEP Neighborhood
BP GO:0046128 purine ribonucleoside metabolic process IEP Neighborhood
BP GO:0046129 purine ribonucleoside biosynthetic process IEP Neighborhood
CC GO:0061695 transferase complex, transferring phosphorus-containing groups IEP Neighborhood
CC GO:0090730 Las1 complex IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
MF GO:0097367 carbohydrate derivative binding IEP Neighborhood
BP GO:0097659 nucleic acid-templated transcription IEP Neighborhood
BP GO:1901068 guanosine-containing compound metabolic process IEP Neighborhood
BP GO:1901070 guanosine-containing compound biosynthetic process IEP Neighborhood
MF GO:1901265 nucleoside phosphate binding IEP Neighborhood
BP GO:1901362 organic cyclic compound biosynthetic process IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
BP GO:1901659 glycosyl compound biosynthetic process IEP Neighborhood
CC GO:1902555 endoribonuclease complex IEP Neighborhood
CC GO:1902911 protein kinase complex IEP Neighborhood
CC GO:1905348 endonuclease complex IEP Neighborhood
CC GO:1905354 exoribonuclease complex IEP Neighborhood
InterPro domains Description Start Stop
IPR007504 H/ACA_rnp_Gar1/Naf1 278 422
No external refs found!