Zm00001e032135_P002

Description : transcription factor (ARF)

Gene families : OG0000080 (Archaeplastida) Phylogenetic Tree(s): OG0000080_tree ,
OG_05_0021212 (LandPlants) Phylogenetic Tree(s): No tree available for this family ,
OG_06_0020450 (SeedPlants) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Zm00001e032135_P002
Cluster	HCCA: Cluster_262

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00155p00082980	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.B3...	0.05	Archaeplastida
AT4G30080	ARF16	auxin response factor 16	0.07	Archaeplastida
GSVIVT01008950001	No alias	Auxin response factor 17 OS=Arabidopsis thaliana	0.03	Archaeplastida
GSVIVT01020805001	No alias	RNA biosynthesis.transcriptional activation.B3...	0.03	Archaeplastida
Gb_39686	No alias	transcription factor (ARF)	0.04	Archaeplastida
LOC_Os01g48060.1	No alias	transcription factor (ARF)	0.03	Archaeplastida
LOC_Os04g57610.1	No alias	transcription factor (ARF)	0.07	Archaeplastida
LOC_Os05g43920.1	No alias	transcription factor (ARF)	0.03	Archaeplastida
LOC_Os05g48870.1	No alias	transcription factor (ARF)	0.06	Archaeplastida
LOC_Os11g32110.1	No alias	transcription factor (ARF)	0.03	Archaeplastida
LOC_Os12g41950.1	No alias	transcription factor (ARF)	0.03	Archaeplastida
MA_137387g0010	No alias	no hits & (original description: none)	0.04	Archaeplastida
Pp3c13_4720V3.1	No alias	auxin response factor 6	0.02	Archaeplastida
Pp3c14_16990V3.1	No alias	auxin response factor 6	0.03	Archaeplastida
Pp3c1_40270V3.1	No alias	auxin response factor 6	0.04	Archaeplastida
Pp3c26_11550V3.1	No alias	auxin response factor 6	0.02	Archaeplastida
Solyc11g069190.2.1	No alias	transcription factor (ARF)	0.04	Archaeplastida
Zm00001e008040_P002	No alias	transcription factor (ARF)	0.08	Archaeplastida
Zm00001e018761_P001	No alias	transcription factor (ARF)	0.04	Archaeplastida
Zm00001e021527_P006	No alias	transcription factor (ARF)	0.06	Archaeplastida
Zm00001e028396_P001	No alias	transcription factor (ARF)	0.03	Archaeplastida
Zm00001e032423_P002	No alias	transcription factor (ARF)	0.08	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	Interproscan
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009719	response to endogenous stimulus	None	Extended
BP	GO:0009725	response to hormone	IEA	Interproscan
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010033	response to organic substance	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0042221	response to chemical	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000030	mannosyltransferase activity	IEP	Neighborhood
MF	GO:0004376	glycolipid mannosyltransferase activity	IEP	Neighborhood
MF	GO:0005524	ATP binding	IEP	Neighborhood
BP	GO:0006464	cellular protein modification process	IEP	Neighborhood
BP	GO:0006497	protein lipidation	IEP	Neighborhood
BP	GO:0006505	GPI anchor metabolic process	IEP	Neighborhood
BP	GO:0006506	GPI anchor biosynthetic process	IEP	Neighborhood
BP	GO:0006643	membrane lipid metabolic process	IEP	Neighborhood
BP	GO:0006644	phospholipid metabolic process	IEP	Neighborhood
BP	GO:0006650	glycerophospholipid metabolic process	IEP	Neighborhood
BP	GO:0006661	phosphatidylinositol biosynthetic process	IEP	Neighborhood
BP	GO:0006664	glycolipid metabolic process	IEP	Neighborhood
BP	GO:0006793	phosphorus metabolic process	IEP	Neighborhood
BP	GO:0006796	phosphate-containing compound metabolic process	IEP	Neighborhood
MF	GO:0008144	drug binding	IEP	Neighborhood
MF	GO:0008289	lipid binding	IEP	Neighborhood
BP	GO:0008654	phospholipid biosynthetic process	IEP	Neighborhood
BP	GO:0009247	glycolipid biosynthetic process	IEP	Neighborhood
CC	GO:0016021	integral component of membrane	IEP	Neighborhood
MF	GO:0016740	transferase activity	IEP	Neighborhood
MF	GO:0030554	adenyl nucleotide binding	IEP	Neighborhood
CC	GO:0031224	intrinsic component of membrane	IEP	Neighborhood
MF	GO:0032559	adenyl ribonucleotide binding	IEP	Neighborhood
MF	GO:0035639	purine ribonucleoside triphosphate binding	IEP	Neighborhood
BP	GO:0036211	protein modification process	IEP	Neighborhood
BP	GO:0043412	macromolecule modification	IEP	Neighborhood
BP	GO:0044267	cellular protein metabolic process	IEP	Neighborhood
BP	GO:0045017	glycerolipid biosynthetic process	IEP	Neighborhood
BP	GO:0046467	membrane lipid biosynthetic process	IEP	Neighborhood
BP	GO:0046474	glycerophospholipid biosynthetic process	IEP	Neighborhood
BP	GO:0046486	glycerolipid metabolic process	IEP	Neighborhood
BP	GO:0046488	phosphatidylinositol metabolic process	IEP	Neighborhood
MF	GO:0051751	alpha-1,4-mannosyltransferase activity	IEP	Neighborhood
BP	GO:1901137	carbohydrate derivative biosynthetic process	IEP	Neighborhood
BP	GO:1903509	liposaccharide metabolic process	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR003340	B3_DNA-bd	130	231
IPR010525	Auxin_resp	257	336

External Links

No external refs found!

Zm00001e032135_P002

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation