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  5. Zm00001e032430_P001

Zm00001e032430_P001


Description : small subunit of U2AF pre-RNA splicing auxiliary factor complex


Gene families : OG0001875 (Archaeplastida) Phylogenetic Tree(s): OG0001875_tree ,
OG_05_0001802 (LandPlants) Phylogenetic Tree(s): OG_05_0001802_tree ,
OG_06_0001679 (SeedPlants) Phylogenetic Tree(s): OG_06_0001679_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e032430_P001
Cluster HCCA: Cluster_276

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00022075.61 No alias RNA processing.RNA splicing.U2-type-intron-specific... 0.02 Archaeplastida
Cre06.g250950 No alias RNA processing.RNA splicing.U2-type-intron-specific... 0.01 Archaeplastida
LOC_Os05g48960.4 No alias small subunit of U2AF pre-RNA splicing auxiliary factor complex 0.03 Archaeplastida
MA_131998g0010 No alias small subunit of U2AF pre-RNA splicing auxiliary factor complex 0.03 Archaeplastida
Solyc10g083640.2.1 No alias small subunit of U2AF pre-RNA splicing auxiliary factor complex 0.1 Archaeplastida
Zm00001e011429_P001 No alias small subunit of U2AF pre-RNA splicing auxiliary factor complex 0.06 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0046872 metal ion binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0003729 mRNA binding IEP Neighborhood
CC GO:0005685 U1 snRNP IEP Neighborhood
BP GO:0006376 mRNA splice site selection IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
BP GO:0022607 cellular component assembly IEP Neighborhood
BP GO:0022618 ribonucleoprotein complex assembly IEP Neighborhood
CC GO:0030532 small nuclear ribonucleoprotein complex IEP Neighborhood
BP GO:0034622 cellular protein-containing complex assembly IEP Neighborhood
BP GO:0043933 protein-containing complex subunit organization IEP Neighborhood
MF GO:0046914 transition metal ion binding IEP Neighborhood
BP GO:0065003 protein-containing complex assembly IEP Neighborhood
BP GO:0071826 ribonucleoprotein complex subunit organization IEP Neighborhood
CC GO:0097525 spliceosomal snRNP complex IEP Neighborhood
CC GO:0120114 Sm-like protein family complex IEP Neighborhood
InterPro domains Description Start Stop
IPR000504 RRM_dom 83 139
IPR000571 Znf_CCCH 150 174
IPR000571 Znf_CCCH 14 38
No external refs found!