AT3G47870 (LBD27, SCP)

Aliases : LBD27, SCP

Description : LOB domain-containing protein 27

Gene families : OG0000101 (Archaeplastida) Phylogenetic Tree(s): OG0000101_tree ,
OG_05_0000037 (LandPlants) Phylogenetic Tree(s): OG_05_0000037_tree ,
OG_06_0009297 (SeedPlants) Phylogenetic Tree(s): OG_06_0009297_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT3G47870
Cluster	HCCA: Cluster_83

Target	Alias	Description	ECC score	Gene Family Method
AT1G06280	LBD2	LOB domain-containing protein 2	0.04	Archaeplastida
AT1G65620	AS2	Lateral organ boundaries (LOB) domain family protein	0.04	Archaeplastida
AT3G50510	LBD28	LOB domain-containing protein 28	0.08	Archaeplastida
GSVIVT01016332001	No alias	RNA biosynthesis.transcriptional activation.AS2/LOB...	0.03	Archaeplastida
GSVIVT01016335001	No alias	RNA biosynthesis.transcriptional activation.AS2/LOB...	0.02	Archaeplastida
GSVIVT01032592001	No alias	RNA biosynthesis.transcriptional activation.AS2/LOB...	0.03	Archaeplastida
Gb_20676	No alias	transcription factor (AS2/LOB)	0.02	Archaeplastida
LOC_Os01g14030.1	No alias	transcription factor (AS2/LOB)	0.02	Archaeplastida
LOC_Os03g17810.1	No alias	transcription factor (AS2/LOB)	0.02	Archaeplastida
LOC_Os09g19950.1	No alias	transcription factor (AS2/LOB)	0.02	Archaeplastida
Pp3c19_19400V3.1	No alias	Lateral organ boundaries (LOB) domain family protein	0.02	Archaeplastida
Solyc02g069440.3.1	No alias	transcription factor (AS2/LOB)	0.02	Archaeplastida
Solyc02g087570.1.1	No alias	transcription factor (AS2/LOB)	0.03	Archaeplastida
Solyc03g113360.4.1	No alias	transcription factor (AS2/LOB)	0.06	Archaeplastida
Solyc06g050950.3.1	No alias	transcription factor (AS2/LOB)	0.03	Archaeplastida
Zm00001e029898_P001	No alias	transcription factor (AS2/LOB)	0.02	Archaeplastida
Zm00001e030195_P001	No alias	transcription factor (AS2/LOB)	0.02	Archaeplastida

Type	GO Term	Name	Evidence	Source
BP	GO:0003006	developmental process involved in reproduction	None	Extended
MF	GO:0003674	molecular_function	ND	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IDA	Interproscan
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0007049	cell cycle	None	Extended
BP	GO:0007275	multicellular organism development	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009555	pollen development	IMP	Interproscan
BP	GO:0009556	microsporogenesis	IMP	Interproscan
BP	GO:0009786	regulation of asymmetric cell division	IMP	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0022402	cell cycle process	None	Extended
BP	GO:0022414	reproductive process	None	Extended
BP	GO:0032501	multicellular organismal process	None	Extended
BP	GO:0032502	developmental process	None	Extended
BP	GO:0034293	sexual sporulation	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0043934	sporulation	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0048229	gametophyte development	None	Extended
BP	GO:0048236	plant-type sporogenesis	None	Extended
BP	GO:0048856	anatomical structure development	None	Extended
BP	GO:0048869	cellular developmental process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051302	regulation of cell division	None	Extended
BP	GO:0051321	meiotic cell cycle	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:1903046	meiotic cell cycle process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0004356	glutamate-ammonia ligase activity	IEP	Neighborhood
MF	GO:0004448	isocitrate dehydrogenase activity	IEP	Neighborhood
MF	GO:0004449	isocitrate dehydrogenase (NAD+) activity	IEP	Neighborhood
MF	GO:0004565	beta-galactosidase activity	IEP	Neighborhood
MF	GO:0004708	MAP kinase kinase activity	IEP	Neighborhood
MF	GO:0004743	pyruvate kinase activity	IEP	Neighborhood
MF	GO:0005198	structural molecule activity	IEP	Neighborhood
MF	GO:0005509	calcium ion binding	IEP	Neighborhood
CC	GO:0005795	Golgi stack	IEP	Neighborhood
BP	GO:0006099	tricarboxylic acid cycle	IEP	Neighborhood
BP	GO:0006101	citrate metabolic process	IEP	Neighborhood
BP	GO:0006102	isocitrate metabolic process	IEP	Neighborhood
MF	GO:0008519	ammonium transmembrane transporter activity	IEP	Neighborhood
MF	GO:0015398	high-affinity secondary active ammonium transmembrane transporter activity	IEP	Neighborhood
BP	GO:0015695	organic cation transport	IEP	Neighborhood
MF	GO:0016211	ammonia ligase activity	IEP	Neighborhood
BP	GO:0016226	iron-sulfur cluster assembly	IEP	Neighborhood
MF	GO:0016880	acid-ammonia (or amide) ligase activity	IEP	Neighborhood
BP	GO:0031163	metallo-sulfur cluster assembly	IEP	Neighborhood
MF	GO:0043169	cation binding	IEP	Neighborhood
MF	GO:0046872	metal ion binding	IEP	Neighborhood
BP	GO:0072488	ammonium transmembrane transport	IEP	Neighborhood
MF	GO:0080046	quercetin 4'-O-glucosyltransferase activity	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR004883	LOB	36	133

External Links

No external refs found!

AT3G47870 (LBD27, SCP)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation