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  5. Zm00001e032586_P001

Zm00001e032586_P001


Description : basal transcription factor (Sigma)


Gene families : OG0000365 (Archaeplastida) Phylogenetic Tree(s): OG0000365_tree ,
OG_05_0012047 (LandPlants) Phylogenetic Tree(s): OG_05_0012047_tree ,
OG_06_0012116 (SeedPlants) Phylogenetic Tree(s): OG_06_0012116_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e032586_P001
Cluster HCCA: Cluster_39

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00009p00072720 evm_27.TU.AmTr_v1... RNA biosynthesis.organelle... 0.03 Archaeplastida
AMTR_s00011p00258380 evm_27.TU.AmTr_v1... RNA biosynthesis.organelle... 0.03 Archaeplastida
AMTR_s00011p00266100 evm_27.TU.AmTr_v1... RNA biosynthesis.organelle... 0.03 Archaeplastida
AMTR_s00025p00248060 evm_27.TU.AmTr_v1... RNA biosynthesis.organelle... 0.04 Archaeplastida
AMTR_s00056p00209700 evm_27.TU.AmTr_v1... RNA biosynthesis.organelle... 0.03 Archaeplastida
AT1G08540 ATSIG1, SIGB,... RNApolymerase sigma subunit 2 0.03 Archaeplastida
AT2G36990 SIGF, SIG6,... RNApolymerase sigma-subunit F 0.03 Archaeplastida
Cre03.g194950 No alias RNA biosynthesis.organelle... 0.02 Archaeplastida
GSVIVT01032193001 No alias RNA biosynthesis.organelle... 0.06 Archaeplastida
GSVIVT01035330001 No alias RNA biosynthesis.organelle... 0.05 Archaeplastida
Gb_03878 No alias basal transcription factor (Sigma) 0.02 Archaeplastida
Gb_05479 No alias basal transcription factor (Sigma) 0.03 Archaeplastida
LOC_Os03g16430.1 No alias basal transcription factor (Sigma) 0.04 Archaeplastida
LOC_Os05g51150.1 No alias basal transcription factor (Sigma) 0.11 Archaeplastida
LOC_Os08g06630.1 No alias basal transcription factor (Sigma) 0.02 Archaeplastida
MA_10429585g0010 No alias basal transcription factor (Sigma) 0.03 Archaeplastida
Solyc01g081490.3.1 No alias basal transcription factor (Sigma) 0.03 Archaeplastida
Solyc03g097320.3.1 No alias basal transcription factor (Sigma) 0.04 Archaeplastida
Solyc08g065970.3.1 No alias basal transcription factor (Sigma) 0.06 Archaeplastida
Solyc09g008040.3.1 No alias basal transcription factor (Sigma) 0.07 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEA Interproscan
BP GO:0006352 DNA-templated transcription, initiation IEA Interproscan
BP GO:0006355 regulation of transcription, DNA-templated IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003690 double-stranded DNA binding IEP Neighborhood
MF GO:0004497 monooxygenase activity IEP Neighborhood
MF GO:0004499 N,N-dimethylaniline monooxygenase activity IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
MF GO:0016491 oxidoreductase activity IEP Neighborhood
MF GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEP Neighborhood
MF GO:0016709 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen IEP Neighborhood
MF GO:0036094 small molecule binding IEP Neighborhood
MF GO:0043167 ion binding IEP Neighborhood
MF GO:0043168 anion binding IEP Neighborhood
MF GO:0050660 flavin adenine dinucleotide binding IEP Neighborhood
MF GO:0050661 NADP binding IEP Neighborhood
MF GO:0050662 coenzyme binding IEP Neighborhood
BP GO:0055114 oxidation-reduction process IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
MF GO:1901265 nucleoside phosphate binding IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
InterPro domains Description Start Stop
IPR007630 RNA_pol_sigma70_r4 503 556
IPR007624 RNA_pol_sigma70_r3 417 489
IPR007627 RNA_pol_sigma70_r2 342 399
No external refs found!