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  5. Zm00001e032679_P001

Zm00001e032679_P001


Description : RNA editing factor (OTP80)


Gene families : OG0000000 (Archaeplastida) Phylogenetic Tree(s): No tree available for this family ,
OG_05_0000000 (LandPlants) Phylogenetic Tree(s): OG_05_0000000_tree ,
OG_06_0000000 (SeedPlants) Phylogenetic Tree(s): OG_06_0000000_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e032679_P001
Cluster HCCA: Cluster_11

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00017p00256920 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At4g21065... 0.04 Archaeplastida
GSVIVT01008721001 No alias Pentatricopeptide repeat-containing protein At5g40410,... 0.03 Archaeplastida
GSVIVT01027001001 No alias Protein modification.phosphorylation.TKL kinase... 0.03 Archaeplastida
Gb_01366 No alias Putative pentatricopeptide repeat-containing protein... 0.02 Archaeplastida
Gb_02086 No alias RNA editing factor (OTP82) 0.02 Archaeplastida
Gb_11981 No alias Pentatricopeptide repeat-containing protein At3g24000,... 0.02 Archaeplastida
LOC_Os03g63560.1 No alias OTP70 plastidial RNA splicing factor 0.03 Archaeplastida
LOC_Os07g31000.1 No alias no hits & (original description: none) 0.03 Archaeplastida
MA_19715g0020 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.02 Archaeplastida
MA_8319g0010 No alias Pentatricopeptide repeat-containing protein At3g24000,... 0.03 Archaeplastida
Smo123655 No alias Pentatricopeptide repeat-containing protein At5g48910... 0.02 Archaeplastida
Smo82024 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.02 Archaeplastida
Zm00001e030704_P001 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0006720 isoprenoid metabolic process IEP Neighborhood
BP GO:0008299 isoprenoid biosynthetic process IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 297 319
IPR002885 Pentatricopeptide_repeat 88 114
IPR002885 Pentatricopeptide_repeat 393 425
IPR002885 Pentatricopeptide_repeat 217 261
IPR002885 Pentatricopeptide_repeat 326 373
IPR032867 DYW_dom 499 622
No external refs found!