1. Home
  2. Species
  3. Zea mays
  4. Sequence
  5. Zm00001e032838_P001

Zm00001e032838_P001


Description : RING-H2-class E3 ligase


Gene families : OG0000004 (Archaeplastida) Phylogenetic Tree(s): No tree available for this family ,
OG_05_0000593 (LandPlants) Phylogenetic Tree(s): OG_05_0000593_tree ,
OG_06_0000328 (SeedPlants) Phylogenetic Tree(s): OG_06_0000328_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e032838_P001
Cluster HCCA: Cluster_78

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00025p00229930 evm_27.TU.AmTr_v1... Protein degradation.peptide tagging.Ubiquitin... 0.01 Archaeplastida
AMTR_s00129p00065710 evm_27.TU.AmTr_v1... Protein degradation.peptide tagging.Ubiquitin... 0.02 Archaeplastida
AT1G49210 No alias RING/U-box superfamily protein 0.05 Archaeplastida
AT2G17450 RHA3A RING-H2 finger A3A 0.03 Archaeplastida
AT2G17730 NIP2 NEP-interacting protein 2 0.01 Archaeplastida
AT2G35910 No alias RING/U-box superfamily protein 0.03 Archaeplastida
AT2G37580 No alias RING/U-box superfamily protein 0.02 Archaeplastida
AT2G44578 No alias RING/U-box superfamily protein 0.02 Archaeplastida
AT3G03550 No alias RING/U-box superfamily protein 0.03 Archaeplastida
AT3G11110 No alias RING/U-box superfamily protein 0.04 Archaeplastida
AT3G18773 No alias RING/U-box superfamily protein 0.07 Archaeplastida
AT3G20395 No alias RING/U-box superfamily protein 0.1 Archaeplastida
AT3G43430 No alias RING/U-box superfamily protein 0.01 Archaeplastida
AT3G61460 BRH1 brassinosteroid-responsive RING-H2 0.04 Archaeplastida
AT4G35480 RHA3B RING-H2 finger A3B 0.04 Archaeplastida
AT4G38140 No alias RING/U-box superfamily protein 0.05 Archaeplastida
AT5G07040 No alias RING/U-box superfamily protein 0.02 Archaeplastida
AT5G17600 No alias RING/U-box superfamily protein 0.07 Archaeplastida
AT5G41400 No alias RING/U-box superfamily protein 0.04 Archaeplastida
AT5G43420 No alias RING/U-box superfamily protein 0.01 Archaeplastida
GSVIVT01008754001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.01 Archaeplastida
GSVIVT01015682001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.02 Archaeplastida
GSVIVT01022306001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.03 Archaeplastida
Gb_02533 No alias RING-H2-class E3 ligase 0.02 Archaeplastida
Gb_03946 No alias no hits & (original description: none) 0.02 Archaeplastida
Gb_04642 No alias RING-H2-class E3 ligase 0.02 Archaeplastida
Gb_04643 No alias RING-H2 finger protein ATL60 OS=Arabidopsis thaliana... 0.02 Archaeplastida
Gb_04644 No alias RING-H2-class E3 ligase 0.01 Archaeplastida
Gb_04645 No alias RING-H2-class E3 ligase 0.01 Archaeplastida
Gb_05005 No alias E3 ubiquitin-protein ligase RHA1B OS=Arabidopsis... 0.02 Archaeplastida
Gb_14777 No alias RING-H2-class E3 ligase 0.02 Archaeplastida
Gb_14778 No alias RING-H2-class E3 ligase 0.01 Archaeplastida
Gb_15297 No alias RING-H2-class E3 ligase 0.02 Archaeplastida
Gb_20666 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
Gb_23066 No alias no hits & (original description: none) 0.01 Archaeplastida
Gb_26582 No alias RING-H2-class E3 ligase 0.02 Archaeplastida
Gb_28973 No alias Probable E3 ubiquitin-protein ligase RHA1A... 0.01 Archaeplastida
Gb_28980 No alias no hits & (original description: none) 0.03 Archaeplastida
Gb_32878 No alias RING-H2-class E3 ligase 0.02 Archaeplastida
Gb_35824 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
Gb_40644 No alias no hits & (original description: none) 0.1 Archaeplastida
Gb_41046 No alias Putative RING-H2 finger protein ATL12 OS=Arabidopsis... 0.03 Archaeplastida
LOC_Os01g11520.1 No alias RING-H2-class E3 ligase 0.01 Archaeplastida
LOC_Os01g16120.1 No alias no hits & (original description: none) 0.01 Archaeplastida
LOC_Os01g64620.1 No alias RING-H2 finger protein ATL72 OS=Arabidopsis thaliana... 0.08 Archaeplastida
LOC_Os02g36330.1 No alias RING-H2-class E3 ligase 0.02 Archaeplastida
LOC_Os02g49710.1 No alias IDF1 iron uptake IRT1-ubiquitin ligase 0.05 Archaeplastida
LOC_Os02g52210.1 No alias RING-H2-class E3 ligase 0.02 Archaeplastida
LOC_Os03g05560.1 No alias RING-H2-class E3 ligase 0.02 Archaeplastida
LOC_Os03g57410.1 No alias Putative RING-H2 finger protein ATL71 OS=Arabidopsis... 0.02 Archaeplastida
LOC_Os04g16970.1 No alias no hits & (original description: none) 0.01 Archaeplastida
LOC_Os05g15170.1 No alias RING-H2-class E3 ligase 0.01 Archaeplastida
LOC_Os06g11450.1 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
LOC_Os07g06560.1 No alias RING-H2-class E3 ligase 0.08 Archaeplastida
LOC_Os09g37050.1 No alias NEP1-interacting protein 1 OS=Arabidopsis thaliana... 0.01 Archaeplastida
LOC_Os09g38110.1 No alias RING-H2 finger protein ATL80 OS=Arabidopsis thaliana... 0.04 Archaeplastida
LOC_Os12g40460.1 No alias RING-H2-class E3 ligase 0.01 Archaeplastida
MA_10021g0010 No alias RING-H2-class E3 ligase 0.01 Archaeplastida
MA_114175g0010 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
MA_15246g0010 No alias RING-H2-class E3 ligase 0.04 Archaeplastida
MA_167410g0010 No alias no hits & (original description: none) 0.01 Archaeplastida
MA_181940g0010 No alias RING-H2-class E3 ligase 0.04 Archaeplastida
MA_2159g0010 No alias RING-H2 finger protein ATL78 OS=Arabidopsis thaliana... 0.05 Archaeplastida
MA_227897g0010 No alias RING-H2-class E3 ligase 0.02 Archaeplastida
MA_308999g0010 No alias RING-H2 finger protein ATL3 OS=Arabidopsis thaliana... 0.02 Archaeplastida
MA_373963g0010 No alias no hits & (original description: none) 0.08 Archaeplastida
MA_38690g0010 No alias RING-H2-class E3 ligase 0.02 Archaeplastida
MA_5170g0020 No alias no hits & (original description: none) 0.01 Archaeplastida
MA_85088g0010 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
MA_895676g0010 No alias no hits & (original description: none) 0.17 Archaeplastida
MA_9143538g0010 No alias no hits & (original description: none) 0.02 Archaeplastida
MA_9521306g0010 No alias RING-H2-class E3 ligase 0.11 Archaeplastida
Mp4g15970.1 No alias no hits & (original description: none) 0.03 Archaeplastida
Mp6g19130.1 No alias no hits & (original description: none) 0.01 Archaeplastida
Pp3c18_5860V3.1 No alias RING/U-box superfamily protein 0.04 Archaeplastida
Smo101273 No alias Protein degradation.peptide tagging.Ubiquitin... 0.03 Archaeplastida
Solyc02g067680.1.1 No alias RING-H2-class E3 ligase 0.04 Archaeplastida
Solyc02g082420.3.1 No alias RING-H2-class E3 ligase 0.05 Archaeplastida
Solyc02g083400.3.1 No alias NEP1-interacting protein 2 OS=Arabidopsis thaliana... 0.03 Archaeplastida
Solyc03g083460.3.1 No alias RING-H2 finger protein ATL22 OS=Arabidopsis thaliana... 0.03 Archaeplastida
Solyc03g115465.1.1 No alias no hits & (original description: none) 0.01 Archaeplastida
Solyc03g123680.1.1 No alias RING-H2-class E3 ligase 0.01 Archaeplastida
Solyc04g081890.1.1 No alias E3 ubiquitin-protein ligase ATL23 OS=Arabidopsis... 0.03 Archaeplastida
Solyc05g010170.2.1 No alias no hits & (original description: none) 0.01 Archaeplastida
Solyc06g061250.3.1 No alias RING-H2-class E3 ligase 0.02 Archaeplastida
Solyc06g150136.1.1 No alias RING-H2-class E3 ligase 0.02 Archaeplastida
Solyc07g053420.4.1 No alias no hits & (original description: none) 0.01 Archaeplastida
Solyc08g008080.1.1 No alias E3 ubiquitin-protein ligase RHA1B OS=Arabidopsis... 0.03 Archaeplastida
Solyc09g089890.1.1 No alias RING-H2-class E3 ligase 0.05 Archaeplastida
Solyc10g008080.3.1 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
Solyc10g009487.1.1 No alias RING-H2 finger protein ATL20 OS=Arabidopsis thaliana... 0.05 Archaeplastida
Solyc11g005290.1.1 No alias RING-H2-class E3 ligase 0.02 Archaeplastida
Solyc11g005320.1.1 No alias RING-H2-class E3 ligase 0.02 Archaeplastida
Solyc12g055710.1.1 No alias RING-H2-class E3 ligase 0.02 Archaeplastida
Solyc12g087840.1.1 No alias RING-H2-class E3 ligase 0.02 Archaeplastida
Zm00001e015495_P001 No alias RING-H2-class E3 ligase 0.02 Archaeplastida
Zm00001e016474_P001 No alias RING-H2-class E3 ligase 0.01 Archaeplastida
Zm00001e019779_P001 No alias RING-H2-class E3 ligase 0.02 Archaeplastida
Zm00001e026906_P001 No alias no hits & (original description: none) 0.01 Archaeplastida
Zm00001e030930_P001 No alias no hits & (original description: none) 0.01 Archaeplastida
Zm00001e034025_P001 No alias no hits & (original description: none) 0.01 Archaeplastida
Zm00001e036289_P001 No alias no hits & (original description: none) 0.04 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
BP GO:0008037 cell recognition IEP Neighborhood
BP GO:0009719 response to endogenous stimulus IEP Neighborhood
BP GO:0009725 response to hormone IEP Neighborhood
BP GO:0009733 response to auxin IEP Neighborhood
BP GO:0010033 response to organic substance IEP Neighborhood
BP GO:0022414 reproductive process IEP Neighborhood
BP GO:0042221 response to chemical IEP Neighborhood
BP GO:0048544 recognition of pollen IEP Neighborhood
InterPro domains Description Start Stop
IPR001841 Znf_RING 100 143
No external refs found!