Zm00001e032871_P004


Description : ubiquitin protease (USP7). deubiquitinase (UBP12-13)


Gene families : OG0000966 (Archaeplastida) Phylogenetic Tree(s): OG0000966_tree ,
OG_05_0001134 (LandPlants) Phylogenetic Tree(s): OG_05_0001134_tree ,
OG_06_0001034 (SeedPlants) Phylogenetic Tree(s): OG_06_0001034_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e032871_P004
Cluster HCCA: Cluster_61

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00004p00140970 evm_27.TU.AmTr_v1... Ubiquitin carboxyl-terminal hydrolase 13 OS=Arabidopsis thaliana 0.1 Archaeplastida
AT3G11910 UBP13 ubiquitin-specific protease 13 0.12 Archaeplastida
AT5G06600 UBP12 ubiquitin-specific protease 12 0.11 Archaeplastida
Cpa|evm.model.tig00000217.46 No alias Ubiquitin carboxyl-terminal hydrolase 12 OS=Arabidopsis thaliana 0.02 Archaeplastida
Cpa|evm.model.tig00001366.11 No alias Ubiquitin carboxyl-terminal hydrolase 13 OS=Arabidopsis thaliana 0.03 Archaeplastida
Cpa|evm.model.tig00021350.29 No alias Ubiquitin carboxyl-terminal hydrolase 12 OS=Arabidopsis thaliana 0.02 Archaeplastida
Cpa|evm.model.tig00021350.30 No alias Protein degradation.peptidase families.cysteine-type... 0.02 Archaeplastida
Cre07.g336200 No alias Ubiquitin carboxyl-terminal hydrolase 12 OS=Arabidopsis thaliana 0.02 Archaeplastida
GSVIVT01022498001 No alias Protein degradation.peptidase families.cysteine-type... 0.08 Archaeplastida
GSVIVT01034603001 No alias Protein degradation.peptidase families.cysteine-type... 0.08 Archaeplastida
GSVIVT01037528001 No alias Protein degradation.peptidase families.cysteine-type... 0.05 Archaeplastida
Gb_02820 No alias ubiquitin protease (USP7). deubiquitinase (UBP12-13) 0.04 Archaeplastida
Gb_04866 No alias ubiquitin protease (USP7). deubiquitinase (UBP12-13) 0.04 Archaeplastida
Gb_34568 No alias ubiquitin protease (USP7). deubiquitinase (UBP12-13) 0.04 Archaeplastida
LOC_Os01g56490.1 No alias ubiquitin protease (USP7). deubiquitinase (UBP12-13) 0.12 Archaeplastida
LOC_Os07g06950.1 No alias ubiquitin protease (USP7). deubiquitinase (UBP12-13) 0.1 Archaeplastida
LOC_Os11g36470.1 No alias ubiquitin protease (USP7). deubiquitinase (UBP12-13) 0.1 Archaeplastida
LOC_Os12g30540.1 No alias ubiquitin protease (USP7). deubiquitinase (UBP12-13) 0.15 Archaeplastida
MA_10426331g0010 No alias ubiquitin protease (USP7). deubiquitinase (UBP12-13) 0.08 Archaeplastida
MA_10427483g0010 No alias ubiquitin protease (USP7). deubiquitinase (UBP12-13) 0.05 Archaeplastida
MA_10427483g0020 No alias deubiquitinase (UBP12-13) 0.09 Archaeplastida
MA_10428769g0010 No alias ubiquitin protease (USP7). deubiquitinase (UBP12-13) 0.07 Archaeplastida
MA_75085g0010 No alias deubiquitinase (UBP12-13) 0.07 Archaeplastida
Mp3g15430.1 No alias ubiquitin protease (USP7). deubiquitinase (UBP12-13) 0.06 Archaeplastida
Pp3c11_18780V3.1 No alias ubiquitin-specific protease 12 0.03 Archaeplastida
Pp3c15_15710V3.1 No alias ubiquitin-specific protease 12 0.05 Archaeplastida
Pp3c7_7420V3.1 No alias ubiquitin-specific protease 12 0.07 Archaeplastida
Smo444302 No alias Protein degradation.peptidase families.cysteine-type... 0.05 Archaeplastida
Solyc05g055090.4.1 No alias ubiquitin protease (USP7). deubiquitinase (UBP12-13) 0.05 Archaeplastida
Solyc10g081610.2.1 No alias ubiquitin protease (USP7). deubiquitinase (UBP12-13) 0.09 Archaeplastida
Solyc11g006320.2.1 No alias ubiquitin protease (USP7). deubiquitinase (UBP12-13) 0.04 Archaeplastida
Solyc11g071700.2.1 No alias ubiquitin protease (USP7). deubiquitinase (UBP12-13) 0.06 Archaeplastida
Zm00001e019687_P003 No alias ubiquitin protease (USP7). deubiquitinase (UBP12-13) 0.04 Archaeplastida
Zm00001e024432_P001 No alias ubiquitin protease (USP7). deubiquitinase (UBP12-13) 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
BP GO:0016579 protein deubiquitination IEA Interproscan
MF GO:0036459 thiol-dependent ubiquitinyl hydrolase activity IEA Interproscan
Type GO Term Name Evidence Source
CC GO:0000148 1,3-beta-D-glucan synthase complex IEP Neighborhood
MF GO:0000166 nucleotide binding IEP Neighborhood
BP GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEP Neighborhood
BP GO:0000271 polysaccharide biosynthetic process IEP Neighborhood
BP GO:0000956 nuclear-transcribed mRNA catabolic process IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003677 DNA binding IEP Neighborhood
MF GO:0003843 1,3-beta-D-glucan synthase activity IEP Neighborhood
MF GO:0004386 helicase activity IEP Neighborhood
MF GO:0004484 mRNA guanylyltransferase activity IEP Neighborhood
MF GO:0004527 exonuclease activity IEP Neighborhood
MF GO:0004652 polynucleotide adenylyltransferase activity IEP Neighborhood
MF GO:0004843 thiol-dependent ubiquitin-specific protease activity IEP Neighborhood
MF GO:0005524 ATP binding IEP Neighborhood
CC GO:0005634 nucleus IEP Neighborhood
CC GO:0005694 chromosome IEP Neighborhood
BP GO:0005976 polysaccharide metabolic process IEP Neighborhood
BP GO:0006073 cellular glucan metabolic process IEP Neighborhood
BP GO:0006074 (1->3)-beta-D-glucan metabolic process IEP Neighborhood
BP GO:0006075 (1->3)-beta-D-glucan biosynthetic process IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006325 chromatin organization IEP Neighborhood
BP GO:0006351 transcription, DNA-templated IEP Neighborhood
BP GO:0006354 DNA-templated transcription, elongation IEP Neighborhood
BP GO:0006368 transcription elongation from RNA polymerase II promoter IEP Neighborhood
BP GO:0006370 7-methylguanosine mRNA capping IEP Neighborhood
BP GO:0006396 RNA processing IEP Neighborhood
BP GO:0006397 mRNA processing IEP Neighborhood
BP GO:0006401 RNA catabolic process IEP Neighborhood
BP GO:0006402 mRNA catabolic process IEP Neighborhood
BP GO:0006479 protein methylation IEP Neighborhood
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP Neighborhood
BP GO:0006725 cellular aromatic compound metabolic process IEP Neighborhood
CC GO:0008023 transcription elongation factor complex IEP Neighborhood
MF GO:0008138 protein tyrosine/serine/threonine phosphatase activity IEP Neighborhood
MF GO:0008144 drug binding IEP Neighborhood
MF GO:0008192 RNA guanylyltransferase activity IEP Neighborhood
BP GO:0008213 protein alkylation IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
BP GO:0009056 catabolic process IEP Neighborhood
BP GO:0009057 macromolecule catabolic process IEP Neighborhood
BP GO:0009059 macromolecule biosynthetic process IEP Neighborhood
BP GO:0009250 glucan biosynthetic process IEP Neighborhood
BP GO:0009452 7-methylguanosine RNA capping IEP Neighborhood
BP GO:0010468 regulation of gene expression IEP Neighborhood
BP GO:0010921 regulation of phosphatase activity IEP Neighborhood
BP GO:0016043 cellular component organization IEP Neighborhood
BP GO:0016051 carbohydrate biosynthetic process IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
BP GO:0016071 mRNA metabolic process IEP Neighborhood
MF GO:0016278 lysine N-methyltransferase activity IEP Neighborhood
MF GO:0016279 protein-lysine N-methyltransferase activity IEP Neighborhood
BP GO:0016569 covalent chromatin modification IEP Neighborhood
BP GO:0016570 histone modification IEP Neighborhood
BP GO:0016571 histone methylation IEP Neighborhood
CC GO:0016593 Cdc73/Paf1 complex IEP Neighborhood
MF GO:0016779 nucleotidyltransferase activity IEP Neighborhood
MF GO:0017076 purine nucleotide binding IEP Neighborhood
BP GO:0018022 peptidyl-lysine methylation IEP Neighborhood
MF GO:0018024 histone-lysine N-methyltransferase activity IEP Neighborhood
BP GO:0018130 heterocycle biosynthetic process IEP Neighborhood
BP GO:0019220 regulation of phosphate metabolic process IEP Neighborhood
BP GO:0019222 regulation of metabolic process IEP Neighborhood
BP GO:0019438 aromatic compound biosynthetic process IEP Neighborhood
MF GO:0019899 enzyme binding IEP Neighborhood
MF GO:0019902 phosphatase binding IEP Neighborhood
MF GO:0019903 protein phosphatase binding IEP Neighborhood
BP GO:0019941 modification-dependent protein catabolic process IEP Neighborhood
MF GO:0030554 adenyl nucleotide binding IEP Neighborhood
BP GO:0031323 regulation of cellular metabolic process IEP Neighborhood
BP GO:0031399 regulation of protein modification process IEP Neighborhood
MF GO:0031625 ubiquitin protein ligase binding IEP Neighborhood
MF GO:0032553 ribonucleotide binding IEP Neighborhood
MF GO:0032555 purine ribonucleotide binding IEP Neighborhood
MF GO:0032559 adenyl ribonucleotide binding IEP Neighborhood
BP GO:0032774 RNA biosynthetic process IEP Neighborhood
BP GO:0033692 cellular polysaccharide biosynthetic process IEP Neighborhood
BP GO:0034637 cellular carbohydrate biosynthetic process IEP Neighborhood
BP GO:0034641 cellular nitrogen compound metabolic process IEP Neighborhood
BP GO:0034645 cellular macromolecule biosynthetic process IEP Neighborhood
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP Neighborhood
BP GO:0034968 histone lysine methylation IEP Neighborhood
MF GO:0035251 UDP-glucosyltransferase activity IEP Neighborhood
BP GO:0035303 regulation of dephosphorylation IEP Neighborhood
BP GO:0035304 regulation of protein dephosphorylation IEP Neighborhood
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Neighborhood
MF GO:0036094 small molecule binding IEP Neighborhood
BP GO:0036260 RNA capping IEP Neighborhood
MF GO:0042054 histone methyltransferase activity IEP Neighborhood
MF GO:0043167 ion binding IEP Neighborhood
MF GO:0043168 anion binding IEP Neighborhood
CC GO:0043226 organelle IEP Neighborhood
CC GO:0043227 membrane-bounded organelle IEP Neighborhood
CC GO:0043229 intracellular organelle IEP Neighborhood
CC GO:0043231 intracellular membrane-bounded organelle IEP Neighborhood
BP GO:0043248 proteasome assembly IEP Neighborhood
BP GO:0043631 RNA polyadenylation IEP Neighborhood
BP GO:0043632 modification-dependent macromolecule catabolic process IEP Neighborhood
BP GO:0043666 regulation of phosphoprotein phosphatase activity IEP Neighborhood
BP GO:0044042 glucan metabolic process IEP Neighborhood
BP GO:0044248 cellular catabolic process IEP Neighborhood
BP GO:0044262 cellular carbohydrate metabolic process IEP Neighborhood
BP GO:0044264 cellular polysaccharide metabolic process IEP Neighborhood
BP GO:0044265 cellular macromolecule catabolic process IEP Neighborhood
MF GO:0044389 ubiquitin-like protein ligase binding IEP Neighborhood
CC GO:0044424 intracellular part IEP Neighborhood
CC GO:0044459 plasma membrane part IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
MF GO:0044877 protein-containing complex binding IEP Neighborhood
BP GO:0046483 heterocycle metabolic process IEP Neighborhood
MF GO:0046527 glucosyltransferase activity IEP Neighborhood
MF GO:0046914 transition metal ion binding IEP Neighborhood
BP GO:0050789 regulation of biological process IEP Neighborhood
BP GO:0051171 regulation of nitrogen compound metabolic process IEP Neighborhood
BP GO:0051174 regulation of phosphorus metabolic process IEP Neighborhood
BP GO:0051273 beta-glucan metabolic process IEP Neighborhood
BP GO:0051274 beta-glucan biosynthetic process IEP Neighborhood
BP GO:0051276 chromosome organization IEP Neighborhood
BP GO:0051336 regulation of hydrolase activity IEP Neighborhood
BP GO:0051603 proteolysis involved in cellular protein catabolic process IEP Neighborhood
MF GO:0060090 molecular adaptor activity IEP Neighborhood
BP GO:0060255 regulation of macromolecule metabolic process IEP Neighborhood
BP GO:0065007 biological regulation IEP Neighborhood
MF GO:0070566 adenylyltransferase activity IEP Neighborhood
MF GO:0070568 guanylyltransferase activity IEP Neighborhood
BP GO:0071840 cellular component organization or biogenesis IEP Neighborhood
BP GO:0080090 regulation of primary metabolic process IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
MF GO:0097367 carbohydrate derivative binding IEP Neighborhood
BP GO:0097659 nucleic acid-templated transcription IEP Neighborhood
CC GO:0098797 plasma membrane protein complex IEP Neighborhood
MF GO:1901265 nucleoside phosphate binding IEP Neighborhood
BP GO:1901360 organic cyclic compound metabolic process IEP Neighborhood
BP GO:1901362 organic cyclic compound biosynthetic process IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
BP GO:1901575 organic substance catabolic process IEP Neighborhood
CC GO:1902494 catalytic complex IEP Neighborhood
CC GO:1990234 transferase complex IEP Neighborhood
InterPro domains Description Start Stop
IPR029346 USP_C 998 1206
IPR002083 MATH/TRAF_dom 173 293
IPR024729 USP7_ICP0-binding_dom 736 988
IPR001394 Peptidase_C19_UCH 311 632
No external refs found!