Zm00001e033127_P003

Description : ARF-GTPase

Gene families : OG0000310 (Archaeplastida) Phylogenetic Tree(s): OG0000310_tree ,
OG_05_0000213 (LandPlants) Phylogenetic Tree(s): OG_05_0000213_tree ,
OG_06_0000536 (SeedPlants) Phylogenetic Tree(s): OG_06_0000536_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Zm00001e033127_P003
Cluster	HCCA: Cluster_108

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00003p00209290	No alias	Vesicle trafficking.Coat protein I (COPI) coatomer...	0.04	Archaeplastida
AMTR_s00096p00110370	No alias	Vesicle trafficking.Coat protein I (COPI) coatomer...	0.02	Archaeplastida
AT1G10630	ATARFA1F, ARFA1F	ADP-ribosylation factor A1F	0.03	Archaeplastida
AT1G23490	ATARF1, ARF1,...	ADP-ribosylation factor 1	0.04	Archaeplastida
AT1G70490	ARFA1D, ATARFA1D	Ras-related small GTP-binding family protein	0.07	Archaeplastida
AT2G24765	ATARL1, ARF3, ARL1	ADP-ribosylation factor 3	0.06	Archaeplastida
AT5G17060	ATARFB1B, ARFB1B	ADP-ribosylation factor B1B	0.04	Archaeplastida
Cpa\|evm.model.tig00001093.2	No alias	Vesicle trafficking.Coat protein I (COPI) coatomer...	0.01	Archaeplastida
Cpa\|evm.model.tig00021127.129	No alias	Vesicle trafficking.Coat protein I (COPI) coatomer...	0.03	Archaeplastida
Cre12.g535900	No alias	Vesicle trafficking.Coat protein I (COPI) coatomer...	0.02	Archaeplastida
GSVIVT01013765001	No alias	Vesicle trafficking.Coat protein I (COPI) coatomer...	0.04	Archaeplastida
GSVIVT01017654001	No alias	Vesicle trafficking.Coat protein I (COPI) coatomer...	0.03	Archaeplastida
GSVIVT01028179001	No alias	Vesicle trafficking.Coat protein I (COPI) coatomer...	0.07	Archaeplastida
LOC_Os05g41060.1	No alias	ARF-GTPase	0.05	Archaeplastida
LOC_Os07g12170.1	No alias	ARF-GTPase	0.05	Archaeplastida
LOC_Os07g12200.1	No alias	ARF-GTPase	0.1	Archaeplastida
LOC_Os08g15040.1	No alias	ARF-GTPase	0.07	Archaeplastida
MA_4349g0020	No alias	ARF-GTPase	0.02	Archaeplastida
MA_92857g0020	No alias	no hits & (original description: none)	0.04	Archaeplastida
Mp4g04230.1	No alias	ARF-GTPase	0.03	Archaeplastida
Mp7g13050.1	No alias	ARF-GTPase	0.05	Archaeplastida
Mp8g06130.1	No alias	ARF-GTPase	0.04	Archaeplastida
Pp3c12_14910V3.1	No alias	ADP-ribosylation factor A1E	0.03	Archaeplastida
Pp3c12_14940V3.1	No alias	ADP-ribosylation factor A1E	0.09	Archaeplastida
Pp3c15_21880V3.1	No alias	ADP-ribosylation factor 3	0.03	Archaeplastida
Pp3c3_20930V3.1	No alias	ADP-ribosylation factor B1B	0.02	Archaeplastida
Pp3c4_20580V3.1	No alias	ADP-ribosylation factor A1E	0.05	Archaeplastida
Pp3c9_17560V3.1	No alias	ADP-ribosylation factor 3	0.03	Archaeplastida
Smo232066	No alias	Vesicle trafficking.Coat protein I (COPI) coatomer...	0.03	Archaeplastida
Solyc01g008000.3.1	No alias	ARF-GTPase	0.03	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0001882	nucleoside binding	None	Extended
MF	GO:0001883	purine nucleoside binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005525	GTP binding	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0019001	guanyl nucleotide binding	None	Extended
MF	GO:0032549	ribonucleoside binding	None	Extended
MF	GO:0032550	purine ribonucleoside binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032561	guanyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000287	magnesium ion binding	IEP	Neighborhood
MF	GO:0003779	actin binding	IEP	Neighborhood
MF	GO:0004427	inorganic diphosphatase activity	IEP	Neighborhood
MF	GO:0005048	signal sequence binding	IEP	Neighborhood
CC	GO:0005737	cytoplasm	IEP	Neighborhood
BP	GO:0006621	protein retention in ER lumen	IEP	Neighborhood
CC	GO:0016021	integral component of membrane	IEP	Neighborhood
MF	GO:0016462	pyrophosphatase activity	IEP	Neighborhood
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	IEP	Neighborhood
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	IEP	Neighborhood
CC	GO:0031224	intrinsic component of membrane	IEP	Neighborhood
BP	GO:0032507	maintenance of protein location in cell	IEP	Neighborhood
MF	GO:0033218	amide binding	IEP	Neighborhood
BP	GO:0035437	maintenance of protein localization in endoplasmic reticulum	IEP	Neighborhood
MF	GO:0042277	peptide binding	IEP	Neighborhood
BP	GO:0045185	maintenance of protein location	IEP	Neighborhood
MF	GO:0046923	ER retention sequence binding	IEP	Neighborhood
BP	GO:0051235	maintenance of location	IEP	Neighborhood
BP	GO:0051651	maintenance of location in cell	IEP	Neighborhood
BP	GO:0065008	regulation of biological quality	IEP	Neighborhood
BP	GO:0072595	maintenance of protein localization in organelle	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR006689	Small_GTPase_ARF/SAR	25	195

External Links

No external refs found!

Zm00001e033127_P003

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation