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  5. Zm00001e033171_P001

Zm00001e033171_P001


Description : Pentatricopeptide repeat-containing protein At2g22070 OS=Arabidopsis thaliana (sp|q9shz8|pp168_arath : 508.0)


Gene families : OG0021291 (Archaeplastida) Phylogenetic Tree(s): No tree available for this family ,
OG_05_0015615 (LandPlants) Phylogenetic Tree(s): OG_05_0015615_tree ,
OG_06_0015319 (SeedPlants) Phylogenetic Tree(s): OG_06_0015319_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e033171_P001
Cluster HCCA: Cluster_158

Target Alias Description ECC score Gene Family Method Actions
LOC_Os07g13540.1 No alias Pentatricopeptide repeat-containing protein At2g22070... 0.06 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003690 double-stranded DNA binding IEP Neighborhood
MF GO:0004386 helicase activity IEP Neighborhood
MF GO:0004519 endonuclease activity IEP Neighborhood
MF GO:0004521 endoribonuclease activity IEP Neighborhood
MF GO:0004523 RNA-DNA hybrid ribonuclease activity IEP Neighborhood
MF GO:0004540 ribonuclease activity IEP Neighborhood
MF GO:0016891 endoribonuclease activity, producing 5'-phosphomonoesters IEP Neighborhood
MF GO:0016893 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters IEP Neighborhood
InterPro domains Description Start Stop
IPR032867 DYW_dom 600 724
IPR002885 Pentatricopeptide_repeat 329 358
IPR002885 Pentatricopeptide_repeat 91 117
IPR002885 Pentatricopeptide_repeat 501 524
IPR002885 Pentatricopeptide_repeat 162 189
IPR002885 Pentatricopeptide_repeat 194 217
IPR002885 Pentatricopeptide_repeat 298 318
IPR002885 Pentatricopeptide_repeat 222 265
IPR002885 Pentatricopeptide_repeat 426 474
No external refs found!