Zm00001e033546_P001

Description : pectin methylesterase

Gene families : OG0000078 (Archaeplastida) Phylogenetic Tree(s): OG0000078_tree ,
OG_05_0000108 (LandPlants) Phylogenetic Tree(s): OG_05_0000108_tree ,
OG_06_0004417 (SeedPlants) Phylogenetic Tree(s): OG_06_0004417_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Zm00001e033546_P001
Cluster	HCCA: Cluster_334

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00003p00085870	evm_27.TU.AmTr_v1...	Cell wall.pectin.homogalacturonan.modification and...	0.02	Archaeplastida
AMTR_s00056p00166920	evm_27.TU.AmTr_v1...	Cell wall.pectin.homogalacturonan.modification and...	0.02	Archaeplastida
AMTR_s00106p00092510	evm_27.TU.AmTr_v1...	Cell wall.pectin.homogalacturonan.modification and...	0.03	Archaeplastida
AMTR_s00116p00025230	evm_27.TU.AmTr_v1...	Probable pectinesterase 8 OS=Arabidopsis thaliana	0.05	Archaeplastida
AT1G05310	No alias	Pectin lyase-like superfamily protein	0.03	Archaeplastida
AT2G36710	No alias	Pectin lyase-like superfamily protein	0.03	Archaeplastida
AT5G19730	No alias	Pectin lyase-like superfamily protein	0.02	Archaeplastida
AT5G26810	No alias	Pectin lyase-like superfamily protein	0.03	Archaeplastida
GSVIVT01000525001	No alias	Cell wall.pectin.homogalacturonan.modification and...	0.02	Archaeplastida
GSVIVT01013838001	No alias	Cell wall.pectin.homogalacturonan.modification and...	0.05	Archaeplastida
GSVIVT01014641001	No alias	Cell wall.pectin.homogalacturonan.modification and...	0.03	Archaeplastida
GSVIVT01015290001	No alias	Cell wall.pectin.homogalacturonan.modification and...	0.03	Archaeplastida
GSVIVT01015852001	No alias	Cell wall.pectin.homogalacturonan.modification and...	0.06	Archaeplastida
GSVIVT01018823001	No alias	Cell wall.pectin.homogalacturonan.modification and...	0.02	Archaeplastida
GSVIVT01023786001	No alias	Cell wall.pectin.homogalacturonan.modification and...	0.02	Archaeplastida
Gb_01460	No alias	pectin methylesterase	0.02	Archaeplastida
Gb_02210	No alias	pectin methylesterase	0.03	Archaeplastida
Gb_17798	No alias	pectin methylesterase	0.02	Archaeplastida
Gb_23209	No alias	pectin methylesterase	0.04	Archaeplastida
Gb_32012	No alias	pectin methylesterase	0.05	Archaeplastida
Gb_39595	No alias	pectin methylesterase	0.03	Archaeplastida
LOC_Os01g19440.1	No alias	pectin methylesterase	0.02	Archaeplastida
LOC_Os09g39760.1	No alias	pectin methylesterase	0.07	Archaeplastida
MA_10267810g0010	No alias	pectin methylesterase	0.02	Archaeplastida
MA_10428610g0010	No alias	pectin methylesterase	0.02	Archaeplastida
MA_14449g0010	No alias	pectin methylesterase	0.03	Archaeplastida
MA_181657g0020	No alias	pectin methylesterase	0.03	Archaeplastida
MA_19196g0010	No alias	pectin methylesterase	0.04	Archaeplastida
MA_66089g0010	No alias	pectin methylesterase	0.02	Archaeplastida
MA_6780346g0010	No alias	no hits & (original description: none)	0.02	Archaeplastida
Pp3c10_19460V3.1	No alias	Pectin lyase-like superfamily protein	0.04	Archaeplastida
Pp3c10_20120V3.1	No alias	Pectin lyase-like superfamily protein	0.02	Archaeplastida
Pp3c16_6660V3.1	No alias	Pectin lyase-like superfamily protein	0.02	Archaeplastida
Pp3c1_6010V3.1	No alias	Pectin lyase-like superfamily protein	0.02	Archaeplastida
Pp3c25_3840V3.1	No alias	Pectin lyase-like superfamily protein	0.02	Archaeplastida
Pp3c25_760V3.1	No alias	Pectin lyase-like superfamily protein	0.02	Archaeplastida
Pp3c3_30560V3.1	No alias	Pectin lyase-like superfamily protein	0.04	Archaeplastida
Pp3c3_32350V3.1	No alias	Pectin lyase-like superfamily protein	0.03	Archaeplastida
Pp3c3_35240V3.1	No alias	Pectin lyase-like superfamily protein	0.04	Archaeplastida
Pp3c5_12660V3.1	No alias	Pectin lyase-like superfamily protein	0.03	Archaeplastida
Pp3c5_12820V3.1	No alias	Pectin lyase-like superfamily protein	0.03	Archaeplastida
Pp3c5_23400V3.1	No alias	Pectin lyase-like superfamily protein	0.02	Archaeplastida
Pp3c8_1680V3.1	No alias	Pectin lyase-like superfamily protein	0.02	Archaeplastida
Smo165098	No alias	Cell wall.pectin.homogalacturonan.modification and...	0.02	Archaeplastida
Smo81583	No alias	Cell wall.pectin.homogalacturonan.modification and...	0.03	Archaeplastida
Solyc01g079180.4.1	No alias	pectin methylesterase	0.03	Archaeplastida
Solyc02g075620.4.1	No alias	pectin methylesterase	0.02	Archaeplastida
Solyc07g043240.4.1	No alias	pectin methylesterase	0.03	Archaeplastida
Solyc09g091730.4.1	No alias	pectin methylesterase	0.02	Archaeplastida
Solyc10g083820.2.1	No alias	no hits & (original description: none)	0.05	Archaeplastida
Zm00001e004804_P001	No alias	pectin methylesterase	0.02	Archaeplastida
Zm00001e020994_P001	No alias	no hits & (original description: none)	0.04	Archaeplastida
Zm00001e035522_P001	No alias	pectin methylesterase	0.03	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016788	hydrolase activity, acting on ester bonds	None	Extended
MF	GO:0030599	pectinesterase activity	IEA	Interproscan
BP	GO:0042545	cell wall modification	IEA	Interproscan
BP	GO:0045229	external encapsulating structure organization	None	Extended
MF	GO:0052689	carboxylic ester hydrolase activity	None	Extended
BP	GO:0071554	cell wall organization or biogenesis	None	Extended
BP	GO:0071555	cell wall organization	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0006355	regulation of transcription, DNA-templated	IEP	Neighborhood
BP	GO:0009889	regulation of biosynthetic process	IEP	Neighborhood
BP	GO:0010215	cellulose microfibril organization	IEP	Neighborhood
BP	GO:0010468	regulation of gene expression	IEP	Neighborhood
BP	GO:0010556	regulation of macromolecule biosynthetic process	IEP	Neighborhood
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	IEP	Neighborhood
BP	GO:0019222	regulation of metabolic process	IEP	Neighborhood
BP	GO:0030198	extracellular matrix organization	IEP	Neighborhood
CC	GO:0031225	anchored component of membrane	IEP	Neighborhood
BP	GO:0031323	regulation of cellular metabolic process	IEP	Neighborhood
BP	GO:0031326	regulation of cellular biosynthetic process	IEP	Neighborhood
BP	GO:0043062	extracellular structure organization	IEP	Neighborhood
BP	GO:0050789	regulation of biological process	IEP	Neighborhood
BP	GO:0050794	regulation of cellular process	IEP	Neighborhood
BP	GO:0051171	regulation of nitrogen compound metabolic process	IEP	Neighborhood
BP	GO:0051252	regulation of RNA metabolic process	IEP	Neighborhood
BP	GO:0055114	oxidation-reduction process	IEP	Neighborhood
BP	GO:0060255	regulation of macromolecule metabolic process	IEP	Neighborhood
BP	GO:0065007	biological regulation	IEP	Neighborhood
BP	GO:0080090	regulation of primary metabolic process	IEP	Neighborhood
BP	GO:1903506	regulation of nucleic acid-templated transcription	IEP	Neighborhood
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	IEP	Neighborhood
BP	GO:2001141	regulation of RNA biosynthetic process	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR000070	Pectinesterase_cat	96	389

External Links

No external refs found!

Zm00001e033546_P001

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation