AT1G15215


Description : BEST Arabidopsis thaliana protein match is: sequence-specific DNA binding transcription factors;sequence-specific DNA binding (TAIR:AT3G18380.1); Has 89 Blast hits to 86 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 89; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).


Gene families : OG0002006 (Archaeplastida) Phylogenetic Tree(s): OG0002006_tree ,
OG_05_0001458 (LandPlants) Phylogenetic Tree(s): OG_05_0001458_tree ,
OG_06_0001429 (SeedPlants) Phylogenetic Tree(s): OG_06_0001429_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT1G15215
Cluster HCCA: Cluster_24

Target Alias Description ECC score Gene Family Method Actions
LOC_Os09g17770.1 No alias RNA polymerase-IV-positioning factor (SHH).... 0.03 Archaeplastida

Type GO Term Name Evidence Source
CC GO:0005634 nucleus ISM Interproscan
BP GO:0006306 DNA methylation IMP Interproscan
BP GO:0006346 methylation-dependent chromatin silencing IMP Interproscan
BP GO:0031047 gene silencing by RNA IMP Interproscan
Type GO Term Name Evidence Source
BP GO:0000002 mitochondrial genome maintenance IEP Neighborhood
BP GO:0000018 regulation of DNA recombination IEP Neighborhood
BP GO:0000162 tryptophan biosynthetic process IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0003743 translation initiation factor activity IEP Neighborhood
MF GO:0004518 nuclease activity IEP Neighborhood
MF GO:0004592 pantoate-beta-alanine ligase activity IEP Neighborhood
MF GO:0004640 phosphoribosylanthranilate isomerase activity IEP Neighborhood
MF GO:0004652 polynucleotide adenylyltransferase activity IEP Neighborhood
MF GO:0004815 aspartate-tRNA ligase activity IEP Neighborhood
MF GO:0004930 G-protein coupled receptor activity IEP Neighborhood
CC GO:0005834 heterotrimeric G-protein complex IEP Neighborhood
BP GO:0006275 regulation of DNA replication IEP Neighborhood
BP GO:0006370 7-methylguanosine mRNA capping IEP Neighborhood
BP GO:0006397 mRNA processing IEP Neighborhood
BP GO:0006558 L-phenylalanine metabolic process IEP Neighborhood
BP GO:0006570 tyrosine metabolic process IEP Neighborhood
BP GO:0006571 tyrosine biosynthetic process IEP Neighborhood
BP GO:0006974 cellular response to DNA damage stimulus IEP Neighborhood
BP GO:0007202 activation of phospholipase C activity IEP Neighborhood
MF GO:0008135 translation factor activity, RNA binding IEP Neighborhood
BP GO:0009073 aromatic amino acid family biosynthetic process IEP Neighborhood
BP GO:0009094 L-phenylalanine biosynthetic process IEP Neighborhood
BP GO:0009095 aromatic amino acid family biosynthetic process, prephenate pathway IEP Neighborhood
BP GO:0009452 7-methylguanosine RNA capping IEP Neighborhood
BP GO:0009645 response to low light intensity stimulus IEP Neighborhood
BP GO:0009785 blue light signaling pathway IEP Neighborhood
BP GO:0009875 pollen-pistil interaction IEP Neighborhood
BP GO:0009937 regulation of gibberellic acid mediated signaling pathway IEP Neighborhood
BP GO:0009939 positive regulation of gibberellic acid mediated signaling pathway IEP Neighborhood
BP GO:0010212 response to ionizing radiation IEP Neighborhood
BP GO:0010231 maintenance of seed dormancy IEP Neighborhood
BP GO:0010244 response to low fluence blue light stimulus by blue low-fluence system IEP Neighborhood
BP GO:0010492 maintenance of shoot apical meristem identity IEP Neighborhood
BP GO:0010517 regulation of phospholipase activity IEP Neighborhood
BP GO:0010518 positive regulation of phospholipase activity IEP Neighborhood
BP GO:0010863 positive regulation of phospholipase C activity IEP Neighborhood
BP GO:0010919 regulation of inositol phosphate biosynthetic process IEP Neighborhood
BP GO:0015939 pantothenate metabolic process IEP Neighborhood
BP GO:0015940 pantothenate biosynthetic process IEP Neighborhood
MF GO:0016861 intramolecular oxidoreductase activity, interconverting aldoses and ketoses IEP Neighborhood
MF GO:0016881 acid-amino acid ligase activity IEP Neighborhood
BP GO:0019478 D-amino acid catabolic process IEP Neighborhood
BP GO:0030522 intracellular receptor signaling pathway IEP Neighborhood
BP GO:0032877 positive regulation of DNA endoreduplication IEP Neighborhood
BP GO:0032960 regulation of inositol trisphosphate biosynthetic process IEP Neighborhood
MF GO:0035197 siRNA binding IEP Neighborhood
BP GO:0036260 RNA capping IEP Neighborhood
BP GO:0043687 post-translational protein modification IEP Neighborhood
CC GO:0044214 spanning component of plasma membrane IEP Neighborhood
CC GO:0044459 plasma membrane part IEP Neighborhood
BP GO:0045740 positive regulation of DNA replication IEP Neighborhood
BP GO:0045910 negative regulation of DNA recombination IEP Neighborhood
BP GO:0046219 indolalkylamine biosynthetic process IEP Neighborhood
BP GO:0046416 D-amino acid metabolic process IEP Neighborhood
BP GO:0048451 petal formation IEP Neighborhood
BP GO:0048453 sepal formation IEP Neighborhood
BP GO:0051052 regulation of DNA metabolic process IEP Neighborhood
BP GO:0051053 negative regulation of DNA metabolic process IEP Neighborhood
BP GO:0051054 positive regulation of DNA metabolic process IEP Neighborhood
BP GO:0051345 positive regulation of hydrolase activity IEP Neighborhood
BP GO:0060191 regulation of lipase activity IEP Neighborhood
BP GO:0060193 positive regulation of lipase activity IEP Neighborhood
MF GO:0061980 regulatory RNA binding IEP Neighborhood
MF GO:0070566 adenylyltransferase activity IEP Neighborhood
CC GO:0089717 spanning component of membrane IEP Neighborhood
BP GO:0090068 positive regulation of cell cycle process IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
BP GO:0097437 maintenance of dormancy IEP Neighborhood
CC GO:0098797 plasma membrane protein complex IEP Neighborhood
BP GO:1900274 regulation of phospholipase C activity IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
BP GO:1902221 erythrose 4-phosphate/phosphoenolpyruvate family amino acid metabolic process IEP Neighborhood
BP GO:1902223 erythrose 4-phosphate/phosphoenolpyruvate family amino acid biosynthetic process IEP Neighborhood
BP GO:1902930 regulation of alcohol biosynthetic process IEP Neighborhood
CC GO:1905360 GTPase complex IEP Neighborhood
BP GO:2000105 positive regulation of DNA-dependent DNA replication IEP Neighborhood
InterPro domains Description Start Stop
IPR032001 SAWADEE_dom 105 221
No external refs found!