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  5. Zm00001e033739_P001

Zm00001e033739_P001


Description : component LHCq of LHC-II complex


Gene families : OG0000035 (Archaeplastida) Phylogenetic Tree(s): OG0000035_tree ,
OG_05_0007547 (LandPlants) Phylogenetic Tree(s): OG_05_0007547_tree ,
OG_06_0007672 (SeedPlants) Phylogenetic Tree(s): OG_06_0007672_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e033739_P001
Cluster HCCA: Cluster_208

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00022p00112770 evm_27.TU.AmTr_v1... Photosynthesis.photophosphorylation.photosystem... 0.1 Archaeplastida
AMTR_s00029p00239610 evm_27.TU.AmTr_v1... Photosynthesis.photophosphorylation.photosystem... 0.03 Archaeplastida
AMTR_s00099p00139960 evm_27.TU.AmTr_v1... Photosynthesis.photophosphorylation.photosystem... 0.02 Archaeplastida
AT1G15820 CP24, LHCB6 light harvesting complex photosystem II subunit 6 0.04 Archaeplastida
AT1G19150 LHCA2*1, LHCA6 photosystem I light harvesting complex gene 6 0.05 Archaeplastida
AT1G29910 CAB3, AB180, LHCB1.2 chlorophyll A/B binding protein 3 0.03 Archaeplastida
AT1G29920 CAB2, AB165, LHCB1.1 chlorophyll A/B-binding protein 2 0.03 Archaeplastida
AT1G45474 LHCA5 photosystem I light harvesting complex gene 5 0.06 Archaeplastida
AT1G61520 LHCA3 photosystem I light harvesting complex gene 3 0.09 Archaeplastida
AT1G76570 No alias Chlorophyll A-B binding family protein 0.07 Archaeplastida
AT2G05070 LHCB2.2, LHCB2 photosystem II light harvesting complex gene 2.2 0.06 Archaeplastida
AT2G05100 LHCB2.1, LHCB2 photosystem II light harvesting complex gene 2.1 0.05 Archaeplastida
AT2G34420 LHCB1.5, LHB1B2 photosystem II light harvesting complex gene B1B2 0.03 Archaeplastida
AT3G08940 LHCB4.2 light harvesting complex photosystem II 0.04 Archaeplastida
AT3G27690 LHCB2.3, LHCB2, LHCB2.4 photosystem II light harvesting complex gene 2.3 0.05 Archaeplastida
AT3G47470 CAB4, LHCA4 light-harvesting chlorophyll-protein complex I subunit A4 0.07 Archaeplastida
AT3G54890 LHCA1 photosystem I light harvesting complex gene 1 0.05 Archaeplastida
AT3G61470 LHCA2 photosystem I light harvesting complex gene 2 0.06 Archaeplastida
AT4G10340 LHCB5 light harvesting complex of photosystem II 5 0.07 Archaeplastida
AT5G01530 LHCB4.1 light harvesting complex photosystem II 0.06 Archaeplastida
AT5G54270 LHCB3*1, LHCB3 light-harvesting chlorophyll B-binding protein 3 0.05 Archaeplastida
Cre06.g272650 No alias Photosynthesis.photophosphorylation.photosystem I.LHC-I... 0.02 Archaeplastida
Cre06.g278213 No alias Chlorophyll a-b binding protein P4, chloroplastic... 0.03 Archaeplastida
Cre06.g283050 No alias Photosynthesis.photophosphorylation.photosystem I.LHC-I... 0.02 Archaeplastida
Cre06.g283950 No alias Photosynthesis.photophosphorylation.photosystem... 0.03 Archaeplastida
Cre06.g285250 No alias Photosynthesis.photophosphorylation.photosystem... 0.02 Archaeplastida
Cre07.g344950 No alias Photosystem I chlorophyll a/b-binding protein 5,... 0.02 Archaeplastida
Cre10.g425900 No alias Chlorophyll a-b binding protein 4, chloroplastic... 0.02 Archaeplastida
Cre10.g452050 No alias Photosynthesis.photophosphorylation.photosystem I.LHC-I... 0.02 Archaeplastida
Cre11.g467573 No alias Photosynthesis.photophosphorylation.photosystem I.LHC-I... 0.02 Archaeplastida
Cre12.g508750 No alias Photosystem I chlorophyll a/b-binding protein 6,... 0.02 Archaeplastida
Cre12.g548400 No alias Photosynthesis.photophosphorylation.photosystem... 0.03 Archaeplastida
Cre12.g548950 No alias Photosynthesis.photophosphorylation.photosystem... 0.02 Archaeplastida
Cre16.g673650 No alias Photosynthesis.photophosphorylation.photosystem... 0.02 Archaeplastida
Cre16.g687900 No alias Photosynthesis.photophosphorylation.photosystem I.LHC-I... 0.02 Archaeplastida
Cre17.g720250 No alias Photosynthesis.photophosphorylation.photosystem... 0.03 Archaeplastida
GSVIVT01007988001 No alias Photosynthesis.photophosphorylation.photosystem I.LHC-I... 0.03 Archaeplastida
GSVIVT01010483001 No alias Photosynthesis.photophosphorylation.photosystem I.LHC-I... 0.05 Archaeplastida
GSVIVT01013450001 No alias Photosynthesis.photophosphorylation.photosystem... 0.09 Archaeplastida
GSVIVT01015045001 No alias Photosynthesis.photophosphorylation.photosystem I.LHC-I... 0.03 Archaeplastida
GSVIVT01016295001 No alias Photosynthesis.photophosphorylation.photosystem I.LHC-I... 0.04 Archaeplastida
GSVIVT01019377001 No alias Photosystem I chlorophyll a/b-binding protein 3-1,... 0.11 Archaeplastida
GSVIVT01021405001 No alias Chlorophyll a-b binding protein 21, chloroplastic... 0.04 Archaeplastida
GSVIVT01030053001 No alias Chlorophyll a-b binding protein 151, chloroplastic... 0.02 Archaeplastida
Gb_10163 No alias component LHCa3 of LHC-I complex 0.04 Archaeplastida
Gb_25594 No alias Photosystem I chlorophyll a/b-binding protein 5,... 0.02 Archaeplastida
Gb_32082 No alias component LHCa2 of LHC-I complex 0.02 Archaeplastida
LOC_Os02g10390.1 No alias component LHCa3 of LHC-I complex 0.06 Archaeplastida
LOC_Os02g52650.1 No alias component LHCa5 of LHC-I complex 0.08 Archaeplastida
LOC_Os06g21590.1 No alias component LHCa1 of LHC-I complex 0.06 Archaeplastida
LOC_Os07g37240.1 No alias component LHCb4 of LHC-II complex 0.04 Archaeplastida
LOC_Os07g38960.1 No alias component LHCa2 of LHC-I complex 0.06 Archaeplastida
LOC_Os08g33820.1 No alias component LHCa4 of LHC-I complex 0.08 Archaeplastida
LOC_Os09g12540.1 No alias component LHCq of LHC-II complex 0.12 Archaeplastida
LOC_Os09g17740.1 No alias component LHCb1/2/3 of LHC-II complex 0.03 Archaeplastida
MA_10435703g0010 No alias Chlorophyll a-b binding protein 7, chloroplastic... 0.01 Archaeplastida
MA_129206g0010 No alias component LHCb4 of LHC-II complex 0.04 Archaeplastida
MA_176279g0010 No alias component LHCb5 of LHC-II complex 0.06 Archaeplastida
MA_18273g0010 No alias no hits & (original description: none) 0.02 Archaeplastida
MA_65346g0010 No alias Chlorophyll a-b binding protein P4, chloroplastic... 0.04 Archaeplastida
MA_815900g0010 No alias component LHCa3 of LHC-I complex 0.05 Archaeplastida
Mp1g16850.1 No alias component LHCb4 of LHC-II complex 0.02 Archaeplastida
Mp2g15420.1 No alias component LHCa1 of LHC-I complex 0.02 Archaeplastida
Mp3g07840.1 No alias component LHCa4 of LHC-I complex 0.02 Archaeplastida
Mp4g00930.1 No alias component LHCa3 of LHC-I complex 0.02 Archaeplastida
Mp4g10900.1 No alias component LHCb5 of LHC-II complex 0.02 Archaeplastida
Mp6g01650.1 No alias component LHCb6 of LHC-II complex 0.02 Archaeplastida
Mp7g06760.1 No alias component LHCb1/2/3 of LHC-II complex 0.02 Archaeplastida
Mp7g06780.1 No alias component LHCb1/2/3 of LHC-II complex 0.02 Archaeplastida
Pp3c10_25450V3.1 No alias photosystem I light harvesting complex gene 2 0.02 Archaeplastida
Pp3c12_19200V3.1 No alias photosystem I light harvesting complex gene 2 0.02 Archaeplastida
Pp3c13_14980V3.1 No alias photosystem I light harvesting complex gene 1 0.02 Archaeplastida
Pp3c13_7900V3.1 No alias photosystem II light harvesting complex gene 2.1 0.02 Archaeplastida
Pp3c16_16040V3.1 No alias photosystem I light harvesting complex gene 3 0.02 Archaeplastida
Pp3c27_7010V3.1 No alias photosystem I light harvesting complex gene 3 0.03 Archaeplastida
Pp3c27_7020V3.1 No alias photosystem I light harvesting complex gene 3 0.02 Archaeplastida
Pp3c2_36480V3.1 No alias photosystem II light harvesting complex gene 2.1 0.01 Archaeplastida
Pp3c4_5690V3.1 No alias light harvesting complex photosystem II 0.02 Archaeplastida
Smo104804 No alias Photosynthesis.photophosphorylation.photosystem... 0.04 Archaeplastida
Smo403333 No alias Photosystem I chlorophyll a/b-binding protein 5,... 0.03 Archaeplastida
Smo444370 No alias Photosynthesis.photophosphorylation.photosystem... 0.02 Archaeplastida
Solyc01g105030.3.1 No alias component LHCb6 of LHC-II complex 0.02 Archaeplastida
Solyc03g115900.4.1 No alias component LHCa4 of LHC-I complex 0.06 Archaeplastida
Solyc05g056050.3.1 No alias component LHCa1 of LHC-I complex 0.06 Archaeplastida
Solyc06g063370.3.1 No alias component LHCb5 of LHC-II complex 0.07 Archaeplastida
Solyc06g069730.3.1 No alias component LHCa4 of LHC-I complex 0.02 Archaeplastida
Solyc07g022900.4.1 No alias component LHCa5 of LHC-I complex 0.05 Archaeplastida
Solyc07g047850.3.1 No alias component LHCb1/2/3 of LHC-II complex 0.04 Archaeplastida
Solyc09g014520.3.1 No alias component LHCb4 of LHC-II complex 0.06 Archaeplastida
Solyc10g006230.3.1 No alias component LHCa2 of LHC-I complex 0.12 Archaeplastida
Solyc10g007690.3.1 No alias component LHCa3 of LHC-I complex 0.07 Archaeplastida
Solyc12g006140.2.1 No alias component LHCb1/2/3 of LHC-II complex 0.06 Archaeplastida
Solyc12g011280.2.1 No alias component LHCa3 of LHC-I complex 0.03 Archaeplastida
Solyc12g011450.2.1 No alias component LHCb1/2/3 of LHC-II complex 0.06 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004175 endopeptidase activity IEP Neighborhood
MF GO:0004197 cysteine-type endopeptidase activity IEP Neighborhood
MF GO:0004222 metalloendopeptidase activity IEP Neighborhood
MF GO:0004602 glutathione peroxidase activity IEP Neighborhood
BP GO:0006352 DNA-templated transcription, initiation IEP Neighborhood
BP GO:0006508 proteolysis IEP Neighborhood
BP GO:0008152 metabolic process IEP Neighborhood
MF GO:0008233 peptidase activity IEP Neighborhood
MF GO:0008237 metallopeptidase activity IEP Neighborhood
BP GO:0009057 macromolecule catabolic process IEP Neighborhood
BP GO:0009116 nucleoside metabolic process IEP Neighborhood
BP GO:0009119 ribonucleoside metabolic process IEP Neighborhood
CC GO:0009654 photosystem II oxygen evolving complex IEP Neighborhood
MF GO:0009916 alternative oxidase activity IEP Neighborhood
MF GO:0009975 cyclase activity IEP Neighborhood
MF GO:0009976 tocopherol cyclase activity IEP Neighborhood
MF GO:0010277 chlorophyllide a oxygenase [overall] activity IEP Neighborhood
BP GO:0015969 guanosine tetraphosphate metabolic process IEP Neighborhood
BP GO:0016226 iron-sulfur cluster assembly IEP Neighborhood
BP GO:0016485 protein processing IEP Neighborhood
MF GO:0016679 oxidoreductase activity, acting on diphenols and related substances as donors IEP Neighborhood
MF GO:0016682 oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor IEP Neighborhood
MF GO:0016701 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen IEP Neighborhood
MF GO:0016703 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of one atom of oxygen (internal monooxygenases or internal mixed function oxidases) IEP Neighborhood
BP GO:0030163 protein catabolic process IEP Neighborhood
BP GO:0031163 metallo-sulfur cluster assembly IEP Neighborhood
BP GO:0033865 nucleoside bisphosphate metabolic process IEP Neighborhood
BP GO:0033875 ribonucleoside bisphosphate metabolic process IEP Neighborhood
BP GO:0034032 purine nucleoside bisphosphate metabolic process IEP Neighborhood
BP GO:0034035 purine ribonucleoside bisphosphate metabolic process IEP Neighborhood
CC GO:0034357 photosynthetic membrane IEP Neighborhood
BP GO:0042278 purine nucleoside metabolic process IEP Neighborhood
CC GO:0042651 thylakoid membrane IEP Neighborhood
BP GO:0046128 purine ribonucleoside metabolic process IEP Neighborhood
MF GO:0051537 2 iron, 2 sulfur cluster binding IEP Neighborhood
BP GO:0051604 protein maturation IEP Neighborhood
BP GO:0055114 oxidation-reduction process IEP Neighborhood
MF GO:0070011 peptidase activity, acting on L-amino acid peptides IEP Neighborhood
BP GO:0071586 CAAX-box protein processing IEP Neighborhood
MF GO:0071949 FAD binding IEP Neighborhood
BP GO:1901068 guanosine-containing compound metabolic process IEP Neighborhood
BP GO:1901565 organonitrogen compound catabolic process IEP Neighborhood
BP GO:1901657 glycosyl compound metabolic process IEP Neighborhood
CC GO:1990204 oxidoreductase complex IEP Neighborhood
InterPro domains Description Start Stop
IPR022796 Chloroa_b-bind 162 337
No external refs found!