1. Home
  2. Species
  3. Zea mays
  4. Sequence
  5. Zm00001e033799_P001

Zm00001e033799_P001


Description : Pentatricopeptide repeat-containing protein At4g02750 OS=Arabidopsis thaliana (sp|q9sy02|pp301_arath : 338.0)


Gene families : OG0014167 (Archaeplastida) Phylogenetic Tree(s): OG0014167_tree ,
OG_05_0011427 (LandPlants) Phylogenetic Tree(s): OG_05_0011427_tree ,
OG_06_0011525 (SeedPlants) Phylogenetic Tree(s): OG_06_0011525_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e033799_P001
Cluster HCCA: Cluster_229

Target Alias Description ECC score Gene Family Method Actions
GSVIVT01013207001 No alias Pentatricopeptide repeat-containing protein At1g08070,... 0.06 Archaeplastida
LOC_Os09g24240.1 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.07 Archaeplastida
Solyc08g077320.3.1 No alias Pentatricopeptide repeat-containing protein At3g29230... 0.03 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
BP GO:0006397 mRNA processing IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
BP GO:0016071 mRNA metabolic process IEP Neighborhood
MF GO:0043167 ion binding IEP Neighborhood
MF GO:0043169 cation binding IEP Neighborhood
MF GO:0046872 metal ion binding IEP Neighborhood
MF GO:0046914 transition metal ion binding IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 150 179
IPR002885 Pentatricopeptide_repeat 181 209
IPR002885 Pentatricopeptide_repeat 519 546
IPR002885 Pentatricopeptide_repeat 246 274
IPR002885 Pentatricopeptide_repeat 213 240
IPR002885 Pentatricopeptide_repeat 275 322
IPR002885 Pentatricopeptide_repeat 379 426
No external refs found!