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  5. AT3G49040

AT3G49040


Description : F-box/RNI-like superfamily protein


Gene families : OG0001094 (Archaeplastida) Phylogenetic Tree(s): OG0001094_tree ,
OG_05_0000663 (LandPlants) Phylogenetic Tree(s): OG_05_0000663_tree ,
OG_06_0000324 (SeedPlants) Phylogenetic Tree(s): OG_06_0000324_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT3G49040
Cluster HCCA: Cluster_112

Target Alias Description ECC score Gene Family Method Actions
AT1G05080 No alias F-box/RNI-like/FBD-like domains-containing protein 0.06 Archaeplastida
AT1G32375 No alias F-box/RNI-like/FBD-like domains-containing protein 0.04 Archaeplastida
AT1G50980 No alias F-box/RNI-like/FBD-like domains-containing protein 0.07 Archaeplastida
AT1G55030 No alias RNI-like superfamily protein 0.08 Archaeplastida
AT3G10750 No alias FBD domain family 0.07 Archaeplastida
AT3G26930 No alias Protein with RNI-like/FBD-like domains 0.04 Archaeplastida
AT3G49020 No alias FBD, F-box and Leucine Rich Repeat domains containing protein 0.06 Archaeplastida
AT3G49030 No alias FBD, F-box and Leucine Rich Repeat domains containing protein 0.08 Archaeplastida
AT3G49480 No alias Protein with RNI-like/FBD-like domains 0.04 Archaeplastida
AT3G50710 No alias F-box/RNI-like/FBD-like domains-containing protein 0.04 Archaeplastida
AT3G52690 No alias RNI-like superfamily protein 0.08 Archaeplastida
AT3G53550 No alias FBD-like domain family protein 0.04 Archaeplastida
AT4G00160 No alias F-box/RNI-like/FBD-like domains-containing protein 0.05 Archaeplastida
AT4G10410 No alias Leucine-rich repeat (LRR) family protein 0.03 Archaeplastida
AT4G13965 No alias Protein with RNI-like/FBD-like domains 0.03 Archaeplastida
AT4G26340 No alias F-box/RNI-like/FBD-like domains-containing protein 0.06 Archaeplastida
AT4G26350 No alias F-box/RNI-like/FBD-like domains-containing protein 0.09 Archaeplastida
AT5G38565 No alias F-box/FBD-like domains containing protein 0.04 Archaeplastida
AT5G38570 No alias F-box/RNI-like superfamily protein 0.05 Archaeplastida
AT5G38590 No alias F-box/RNI-like/FBD-like domains-containing protein 0.03 Archaeplastida
AT5G40750 No alias FBD / Leucine Rich Repeat domains containing protein 0.05 Archaeplastida
AT5G44850 No alias Protein with RNI-like/FBD-like domains 0.06 Archaeplastida
AT5G56325 No alias FBD-like domain family protein 0.09 Archaeplastida
AT5G56370 No alias F-box/RNI-like/FBD-like domains-containing protein 0.05 Archaeplastida
AT5G56390 No alias F-box/RNI-like/FBD-like domains-containing protein 0.08 Archaeplastida
AT5G56400 No alias FBD, F-box, Skp2-like and Leucine Rich Repeat domains... 0.1 Archaeplastida
AT5G56430 No alias F-box/FBD-like domains containing protein 0.11 Archaeplastida
AT5G56452 No alias FBD-like domain family protein 0.11 Archaeplastida
AT5G56560 No alias FBD, F-box and Leucine Rich Repeat domains containing protein 0.07 Archaeplastida
AT5G56570 No alias Leucine-rich repeat (LRR) family protein 0.06 Archaeplastida
AT5G56700 No alias FBD / Leucine Rich Repeat domains containing protein 0.03 Archaeplastida
AT5G56820 No alias F-box/RNI-like/FBD-like domains-containing protein 0.02 Archaeplastida
AT5G60610 No alias F-box/RNI-like superfamily protein 0.06 Archaeplastida
AT5G62970 No alias Protein with RNI-like/FBD-like domains 0.09 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003674 molecular_function ND Interproscan
CC GO:0005634 nucleus ISM Interproscan
BP GO:0008150 biological_process ND Interproscan
Toggle parental
Type GO Term Name Evidence Source
CC GO:0000311 plastid large ribosomal subunit IEP Neighborhood
MF GO:0003883 CTP synthase activity IEP Neighborhood
MF GO:0004857 enzyme inhibitor activity IEP Neighborhood
BP GO:0010315 auxin efflux IEP Neighborhood
BP GO:0010541 acropetal auxin transport IEP Neighborhood
MF GO:0046910 pectinesterase inhibitor activity IEP Neighborhood
InterPro domains Description Start Stop
IPR013101 Leu-rich_rpt_2 162 187
IPR006566 FBD 329 375
IPR001810 F-box_dom 12 50
No external refs found!