- Species
- Tools
- Expression Profiles
- Compare profiles
- Create heatmap
- Export expression levels
- Expression Specificity
- Compare specificities
- Find specific profiles
- Co-expression Networks
- Create custom network
- Find enriched clusters
- Search
Description : RNA polymerase-IV-positioning factor (SHH). transcription factor (SAWADEE)
Gene families : OG0002006 (Archaeplastida) Phylogenetic Tree(s): OG0002006_tree ,
OG_05_0001458 (LandPlants) Phylogenetic Tree(s): OG_05_0001458_tree ,
OG_06_0001429 (SeedPlants) Phylogenetic Tree(s): OG_06_0001429_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: Zm00001e033896_P001 | |
| Cluster | HCCA: Cluster_313 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AMTR_s00011p00262800 | evm_27.TU.AmTr_v1... | RNA biosynthesis.transcriptional activation.HB... | 0.03 | Archaeplastida | |
| LOC_Os09g17770.1 | No alias | RNA polymerase-IV-positioning factor (SHH).... | 0.03 | Archaeplastida | |
| Mp3g06860.1 | No alias | RNA polymerase-IV-positioning factor (SHH).... | 0.02 | Archaeplastida |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003682 | chromatin binding | IEA | Interproscan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003905 | alkylbase DNA N-glycosylase activity | IEP | Neighborhood |
| MF | GO:0003950 | NAD+ ADP-ribosyltransferase activity | IEP | Neighborhood |
| MF | GO:0005515 | protein binding | IEP | Neighborhood |
| CC | GO:0005741 | mitochondrial outer membrane | IEP | Neighborhood |
| BP | GO:0006284 | base-excision repair | IEP | Neighborhood |
| BP | GO:0006334 | nucleosome assembly | IEP | Neighborhood |
| BP | GO:0006464 | cellular protein modification process | IEP | Neighborhood |
| BP | GO:0006471 | protein ADP-ribosylation | IEP | Neighborhood |
| MF | GO:0008483 | transaminase activity | IEP | Neighborhood |
| MF | GO:0008725 | DNA-3-methyladenine glycosylase activity | IEP | Neighborhood |
| MF | GO:0010011 | auxin binding | IEP | Neighborhood |
| MF | GO:0016409 | palmitoyltransferase activity | IEP | Neighborhood |
| MF | GO:0016740 | transferase activity | IEP | Neighborhood |
| MF | GO:0016763 | transferase activity, transferring pentosyl groups | IEP | Neighborhood |
| MF | GO:0016769 | transferase activity, transferring nitrogenous groups | IEP | Neighborhood |
| MF | GO:0016799 | hydrolase activity, hydrolyzing N-glycosyl compounds | IEP | Neighborhood |
| MF | GO:0019104 | DNA N-glycosylase activity | IEP | Neighborhood |
| CC | GO:0019867 | outer membrane | IEP | Neighborhood |
| CC | GO:0031090 | organelle membrane | IEP | Neighborhood |
| CC | GO:0031966 | mitochondrial membrane | IEP | Neighborhood |
| CC | GO:0031968 | organelle outer membrane | IEP | Neighborhood |
| BP | GO:0034728 | nucleosome organization | IEP | Neighborhood |
| BP | GO:0036211 | protein modification process | IEP | Neighborhood |
| MF | GO:0042393 | histone binding | IEP | Neighborhood |
| MF | GO:0042562 | hormone binding | IEP | Neighborhood |
| MF | GO:0043733 | DNA-3-methylbase glycosylase activity | IEP | Neighborhood |
| CC | GO:0044422 | organelle part | IEP | Neighborhood |
| CC | GO:0044429 | mitochondrial part | IEP | Neighborhood |
| CC | GO:0044446 | intracellular organelle part | IEP | Neighborhood |
| BP | GO:0065004 | protein-DNA complex assembly | IEP | Neighborhood |
| BP | GO:0071824 | protein-DNA complex subunit organization | IEP | Neighborhood |
| CC | GO:0098588 | bounding membrane of organelle | IEP | Neighborhood |
| CC | GO:0098805 | whole membrane | IEP | Neighborhood |
| MF | GO:0140097 | catalytic activity, acting on DNA | IEP | Neighborhood |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR032001 | SAWADEE_dom | 136 | 262 |
| No external refs found! |