AT3G49240 (emb1796)


Aliases : emb1796

Description : Pentatricopeptide repeat (PPR) superfamily protein


Gene families : OG0004773 (Archaeplastida) Phylogenetic Tree(s): OG0004773_tree ,
OG_05_0003293 (LandPlants) Phylogenetic Tree(s): OG_05_0003293_tree ,
OG_06_0001998 (SeedPlants) Phylogenetic Tree(s): OG_06_0001998_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT3G49240
Cluster HCCA: Cluster_23

Target Alias Description ECC score Gene Family Method Actions
GSVIVT01023159001 No alias Pentatricopeptide repeat-containing protein At1g10270... 0.04 Archaeplastida
Gb_33747 No alias Pentatricopeptide repeat-containing protein At3g49240,... 0.04 Archaeplastida
LOC_Os05g30240.1 No alias Pentatricopeptide repeat-containing protein At1g10270... 0.05 Archaeplastida
LOC_Os11g24570.1 No alias Pentatricopeptide repeat-containing protein At3g49240,... 0.05 Archaeplastida
Zm00001e020614_P001 No alias Pentatricopeptide repeat-containing protein At3g49240,... 0.04 Archaeplastida
Zm00001e032163_P001 No alias Pentatricopeptide repeat-containing protein At3g49240,... 0.05 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IDA Interproscan
CC GO:0005739 mitochondrion IDA Interproscan
CC GO:0005739 mitochondrion ISM Interproscan
BP GO:0009220 pyrimidine ribonucleotide biosynthetic process RCA Interproscan
CC GO:0009507 chloroplast IDA Interproscan
BP GO:0009560 embryo sac egg cell differentiation RCA Interproscan
BP GO:0009640 photomorphogenesis RCA Interproscan
BP GO:0009737 response to abscisic acid RCA Interproscan
BP GO:0009793 embryo development ending in seed dormancy IMP Interproscan
BP GO:0009793 embryo development ending in seed dormancy RCA Interproscan
BP GO:0009793 embryo development ending in seed dormancy NAS Interproscan
BP GO:0009845 seed germination RCA Interproscan
BP GO:0009909 regulation of flower development RCA Interproscan
BP GO:0009933 meristem structural organization RCA Interproscan
BP GO:0010162 seed dormancy process RCA Interproscan
BP GO:0010182 sugar mediated signaling pathway RCA Interproscan
BP GO:0010228 vegetative to reproductive phase transition of meristem RCA Interproscan
BP GO:0010564 regulation of cell cycle process RCA Interproscan
BP GO:0016567 protein ubiquitination RCA Interproscan
BP GO:0019915 lipid storage RCA Interproscan
BP GO:0048366 leaf development RCA Interproscan
BP GO:0048825 cotyledon development RCA Interproscan
BP GO:0050826 response to freezing RCA Interproscan
BP GO:0051301 cell division RCA Interproscan
Type GO Term Name Evidence Source
BP GO:0000412 histone peptidyl-prolyl isomerization IEP Neighborhood
BP GO:0000413 protein peptidyl-prolyl isomerization IEP Neighborhood
BP GO:0000724 double-strand break repair via homologous recombination IEP Neighborhood
BP GO:0000725 recombinational repair IEP Neighborhood
CC GO:0000795 synaptonemal complex IEP Neighborhood
MF GO:0001085 RNA polymerase II transcription factor binding IEP Neighborhood
MF GO:0001091 RNA polymerase II basal transcription factor binding IEP Neighborhood
MF GO:0001093 TFIIB-class transcription factor binding IEP Neighborhood
MF GO:0001098 basal transcription machinery binding IEP Neighborhood
MF GO:0001099 basal RNA polymerase II transcription machinery binding IEP Neighborhood
BP GO:0001510 RNA methylation IEP Neighborhood
MF GO:0004821 histidine-tRNA ligase activity IEP Neighborhood
MF GO:0005527 macrolide binding IEP Neighborhood
MF GO:0005528 FK506 binding IEP Neighborhood
CC GO:0005634 nucleus IEP Neighborhood
CC GO:0005654 nucleoplasm IEP Neighborhood
CC GO:0005730 nucleolus IEP Neighborhood
CC GO:0005778 peroxisomal membrane IEP Neighborhood
BP GO:0006259 DNA metabolic process IEP Neighborhood
BP GO:0006261 DNA-dependent DNA replication IEP Neighborhood
BP GO:0006281 DNA repair IEP Neighborhood
BP GO:0006302 double-strand break repair IEP Neighborhood
BP GO:0006304 DNA modification IEP Neighborhood
BP GO:0006305 DNA alkylation IEP Neighborhood
BP GO:0006306 DNA methylation IEP Neighborhood
BP GO:0006310 DNA recombination IEP Neighborhood
BP GO:0006312 mitotic recombination IEP Neighborhood
BP GO:0006334 nucleosome assembly IEP Neighborhood
BP GO:0006338 chromatin remodeling IEP Neighborhood
BP GO:0006427 histidyl-tRNA aminoacylation IEP Neighborhood
BP GO:0006913 nucleocytoplasmic transport IEP Neighborhood
BP GO:0006974 cellular response to DNA damage stimulus IEP Neighborhood
BP GO:0006996 organelle organization IEP Neighborhood
BP GO:0007005 mitochondrion organization IEP Neighborhood
BP GO:0007059 chromosome segregation IEP Neighborhood
BP GO:0007062 sister chromatid cohesion IEP Neighborhood
BP GO:0007129 synapsis IEP Neighborhood
BP GO:0007131 reciprocal meiotic recombination IEP Neighborhood
MF GO:0008134 transcription factor binding IEP Neighborhood
MF GO:0008641 ubiquitin-like modifier activating enzyme activity IEP Neighborhood
BP GO:0009561 megagametogenesis IEP Neighborhood
BP GO:0009934 regulation of meristem structural organization IEP Neighborhood
BP GO:0010026 trichome differentiation IEP Neighborhood
BP GO:0010165 response to X-ray IEP Neighborhood
BP GO:0010212 response to ionizing radiation IEP Neighborhood
BP GO:0016043 cellular component organization IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
MF GO:0016874 ligase activity IEP Neighborhood
MF GO:0019781 NEDD8 activating enzyme activity IEP Neighborhood
BP GO:0022402 cell cycle process IEP Neighborhood
BP GO:0031497 chromatin assembly IEP Neighborhood
BP GO:0031507 heterochromatin assembly IEP Neighborhood
CC GO:0031903 microbody membrane IEP Neighborhood
BP GO:0032259 methylation IEP Neighborhood
CC GO:0033186 CAF-1 complex IEP Neighborhood
BP GO:0033554 cellular response to stress IEP Neighborhood
BP GO:0034728 nucleosome organization IEP Neighborhood
BP GO:0035825 homologous recombination IEP Neighborhood
MF GO:0042393 histone binding IEP Neighborhood
BP GO:0042991 obsolete transcription factor import into nucleus IEP Neighborhood
CC GO:0043228 non-membrane-bounded organelle IEP Neighborhood
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Neighborhood
BP GO:0043414 macromolecule methylation IEP Neighborhood
CC GO:0044428 nuclear part IEP Neighborhood
CC GO:0044438 microbody part IEP Neighborhood
CC GO:0044439 peroxisomal part IEP Neighborhood
BP GO:0044728 DNA methylation or demethylation IEP Neighborhood
BP GO:0045116 protein neddylation IEP Neighborhood
BP GO:0045787 positive regulation of cell cycle IEP Neighborhood
BP GO:0051052 regulation of DNA metabolic process IEP Neighborhood
BP GO:0051169 nuclear transport IEP Neighborhood
BP GO:0051276 chromosome organization IEP Neighborhood
BP GO:0065004 protein-DNA complex assembly IEP Neighborhood
MF GO:0070063 RNA polymerase binding IEP Neighborhood
BP GO:0070192 chromosome organization involved in meiotic cell cycle IEP Neighborhood
BP GO:0070828 heterochromatin organization IEP Neighborhood
BP GO:0071824 protein-DNA complex subunit organization IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
CC GO:0099086 synaptonemal structure IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 124 175
IPR002885 Pentatricopeptide_repeat 383 431
IPR002885 Pentatricopeptide_repeat 347 376
IPR002885 Pentatricopeptide_repeat 312 338
IPR002885 Pentatricopeptide_repeat 274 300
IPR002885 Pentatricopeptide_repeat 463 484
IPR002885 Pentatricopeptide_repeat 237 265
IPR002885 Pentatricopeptide_repeat 492 518
IPR002885 Pentatricopeptide_repeat 203 232
No external refs found!