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  5. AT1G15250

AT1G15250


Description : Zinc-binding ribosomal protein family protein


Gene families : OG0002317 (Archaeplastida) Phylogenetic Tree(s): OG0002317_tree ,
OG_05_0002166 (LandPlants) Phylogenetic Tree(s): OG_05_0002166_tree ,
OG_06_0002211 (SeedPlants) Phylogenetic Tree(s): OG_06_0002211_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT1G15250
Cluster HCCA: Cluster_39

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00109p00029660 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.large subunit... 0.04 Archaeplastida
Cre10.g430400 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.03 Archaeplastida
GSVIVT01017081001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.05 Archaeplastida
GSVIVT01035677001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.06 Archaeplastida
Gb_33514 No alias component RPL37 of LSU proteome component 0.04 Archaeplastida
Mp2g12400.1 No alias component RPL37 of LSU proteome component 0.03 Archaeplastida
Pp3c15_4370V3.1 No alias Zinc-binding ribosomal protein family protein 0.02 Archaeplastida
Pp3c21_9910V3.1 No alias Zinc-binding ribosomal protein family protein 0.06 Archaeplastida
Solyc08g068180.3.1 No alias component RPL37 of LSU proteome component 0.04 Archaeplastida
Zm00001e013434_P001 No alias component RPL37 of LSU proteome component 0.04 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome ISS Interproscan
CC GO:0005737 cytoplasm ISM Interproscan
CC GO:0005840 ribosome ISS Interproscan
BP GO:0006412 translation ISS Interproscan
CC GO:0022625 cytosolic large ribosomal subunit IDA Interproscan
BP GO:0042254 ribosome biogenesis ISS Interproscan
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Type GO Term Name Evidence Source
MF GO:0000036 acyl carrier activity IEP Neighborhood
CC GO:0000314 organellar small ribosomal subunit IEP Neighborhood
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP Neighborhood
MF GO:0005047 signal recognition particle binding IEP Neighborhood
CC GO:0005759 mitochondrial matrix IEP Neighborhood
CC GO:0005763 mitochondrial small ribosomal subunit IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006354 DNA-templated transcription, elongation IEP Neighborhood
BP GO:0006553 lysine metabolic process IEP Neighborhood
MF GO:0008840 4-hydroxy-tetrahydrodipicolinate synthase IEP Neighborhood
BP GO:0009085 lysine biosynthetic process IEP Neighborhood
BP GO:0009089 lysine biosynthetic process via diaminopimelate IEP Neighborhood
CC GO:0009527 plastid outer membrane IEP Neighborhood
CC GO:0009707 chloroplast outer membrane IEP Neighborhood
CC GO:0010319 stromule IEP Neighborhood
BP GO:0016053 organic acid biosynthetic process IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
MF GO:0016836 hydro-lyase activity IEP Neighborhood
MF GO:0016859 cis-trans isomerase activity IEP Neighborhood
BP GO:0018130 heterocycle biosynthetic process IEP Neighborhood
CC GO:0019867 outer membrane IEP Neighborhood
MF GO:0020037 heme binding IEP Neighborhood
CC GO:0031968 organelle outer membrane IEP Neighborhood
CC GO:0031969 chloroplast membrane IEP Neighborhood
CC GO:0031974 membrane-enclosed lumen IEP Neighborhood
BP GO:0032774 RNA biosynthetic process IEP Neighborhood
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP Neighborhood
MF GO:0043021 ribonucleoprotein complex binding IEP Neighborhood
CC GO:0043233 organelle lumen IEP Neighborhood
BP GO:0043648 dicarboxylic acid metabolic process IEP Neighborhood
CC GO:0044429 mitochondrial part IEP Neighborhood
MF GO:0044620 ACP phosphopantetheine attachment site binding IEP Neighborhood
MF GO:0044877 protein-containing complex binding IEP Neighborhood
BP GO:0046394 carboxylic acid biosynthetic process IEP Neighborhood
BP GO:0046451 diaminopimelate metabolic process IEP Neighborhood
BP GO:0046483 heterocycle metabolic process IEP Neighborhood
MF GO:0046906 tetrapyrrole binding IEP Neighborhood
MF GO:0048037 cofactor binding IEP Neighborhood
MF GO:0051192 prosthetic group binding IEP Neighborhood
CC GO:0070013 intracellular organelle lumen IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
MF GO:0140104 molecular carrier activity IEP Neighborhood
InterPro domains Description Start Stop
IPR001569 Ribosomal_L37e 3 53
No external refs found!