Zm00001e034112_P001

Description : Pentatricopeptide repeat-containing protein At1g74600, chloroplastic OS=Arabidopsis thaliana (sp|q9ca56|pp121_arath : 560.0)

Gene families : OG0000000 (Archaeplastida) Phylogenetic Tree(s): No tree available for this family ,
OG_05_0000000 (LandPlants) Phylogenetic Tree(s): OG_05_0000000_tree ,
OG_06_0012057 (SeedPlants) Phylogenetic Tree(s): OG_06_0012057_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Zm00001e034112_P001

Target	Alias	Description	ECC score	Gene Family Method
LOC_Os03g32620.1	No alias	Putative pentatricopeptide repeat-containing protein...	0.02	Archaeplastida
LOC_Os05g38190.2	No alias	Pentatricopeptide repeat-containing protein At2g27610...	0.01	Archaeplastida
LOC_Os09g07780.1	No alias	Pentatricopeptide repeat-containing protein At3g57430,...	0.09	Archaeplastida
LOC_Os11g01860.1	No alias	Pentatricopeptide repeat-containing protein At3g09040,...	0.03	Archaeplastida

Type	GO Term	Name	Evidence	Source
No GO annotation available for this sequence

Type	GO Term	Name	Evidence	Source
MF	GO:0008270	zinc ion binding	IEP	Neighborhood
MF	GO:0043167	ion binding	IEP	Neighborhood
MF	GO:0043169	cation binding	IEP	Neighborhood
MF	GO:0046872	metal ion binding	IEP	Neighborhood
MF	GO:0046914	transition metal ion binding	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR002885	Pentatricopeptide_repeat	681	703
IPR002885	Pentatricopeptide_repeat	415	437
IPR002885	Pentatricopeptide_repeat	542	571
IPR002885	Pentatricopeptide_repeat	109	132
IPR002885	Pentatricopeptide_repeat	714	739
IPR002885	Pentatricopeptide_repeat	614	636
IPR002885	Pentatricopeptide_repeat	239	286
IPR002885	Pentatricopeptide_repeat	138	186
IPR002885	Pentatricopeptide_repeat	439	485
IPR002885	Pentatricopeptide_repeat	639	676

External Links

No external refs found!