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  5. Zm00001e034143_P002

Zm00001e034143_P002


Description : Probable CCR4-associated factor 1 homolog 7 OS=Arabidopsis thaliana (sp|q9skz2|caf1g_arath : 405.0)


Gene families : OG0000981 (Archaeplastida) Phylogenetic Tree(s): OG0000981_tree ,
OG_05_0001237 (LandPlants) Phylogenetic Tree(s): OG_05_0001237_tree ,
OG_06_0001421 (SeedPlants) Phylogenetic Tree(s): OG_06_0001421_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e034143_P002
Cluster HCCA: Cluster_166

Target Alias Description ECC score Gene Family Method Actions
Smo444748 No alias Probable CCR4-associated factor 1 homolog 6... 0.02 Archaeplastida
Zm00001e022474_P001 No alias Probable CCR4-associated factor 1 homolog 6... 0.04 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
CC GO:0000145 exocyst IEP Neighborhood
BP GO:0000375 RNA splicing, via transesterification reactions IEP Neighborhood
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Neighborhood
BP GO:0000398 mRNA splicing, via spliceosome IEP Neighborhood
BP GO:0006396 RNA processing IEP Neighborhood
BP GO:0006397 mRNA processing IEP Neighborhood
BP GO:0006790 sulfur compound metabolic process IEP Neighborhood
BP GO:0006887 exocytosis IEP Neighborhood
BP GO:0008380 RNA splicing IEP Neighborhood
BP GO:0016071 mRNA metabolic process IEP Neighborhood
BP GO:0016226 iron-sulfur cluster assembly IEP Neighborhood
BP GO:0022607 cellular component assembly IEP Neighborhood
CC GO:0030532 small nuclear ribonucleoprotein complex IEP Neighborhood
BP GO:0031163 metallo-sulfur cluster assembly IEP Neighborhood
BP GO:0032940 secretion by cell IEP Neighborhood
CC GO:0032991 protein-containing complex IEP Neighborhood
CC GO:0044428 nuclear part IEP Neighborhood
CC GO:0044448 cell cortex part IEP Neighborhood
CC GO:0046540 U4/U6 x U5 tri-snRNP complex IEP Neighborhood
BP GO:0046903 secretion IEP Neighborhood
BP GO:0051186 cofactor metabolic process IEP Neighborhood
MF GO:0051536 iron-sulfur cluster binding IEP Neighborhood
MF GO:0051540 metal cluster binding IEP Neighborhood
CC GO:0097525 spliceosomal snRNP complex IEP Neighborhood
CC GO:0097526 spliceosomal tri-snRNP complex IEP Neighborhood
CC GO:0099023 tethering complex IEP Neighborhood
CC GO:0120114 Sm-like protein family complex IEP Neighborhood
InterPro domains Description Start Stop
IPR006941 RNase_CAF1 17 139
IPR006941 RNase_CAF1 162 246
No external refs found!